Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K10D3.3
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Query: K10D3.3 CE06172 locus:taf-11.2 transcription factor status:Partially_confirmed TR:Q21417 protein_id:CAA99885.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TAFII28 hTAFII28-like protein conserved region 182.3 5.8e-56 1
Glyco_hydro_38 Glycosyl hydrolases family 38 1.9 6.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glyco_hydro_38 1/1 211 250 .. 674 714 .] 1.9 6.3
TAFII28 1/1 221 312 .. 1 99 [] 182.3 5.8e-56
Alignments of top-scoring domains:
Glyco_hydro_38: domain 1 of 1, from 211 to 250: score 1.9, E = 6.3
*->qsssgdveleNeylkveFdeletGllksitrkqdnktvhvn<-*
q+ ++++ l+N +l + F++ e+ + ++++rk++ k+ ++
K10D3.3 211 QEEKEIILLKNQVLVANFSQ-EQIERYEVYRKSSFKKSTIK 250
TAFII28: domain 1 of 1, from 221 to 312: score 182.3, E = 5.8e-56
*->mqvLvsnFsedQlnRYEvFRRSsLkKsqvKkLisqsnvvtggqsvse
+qvLv nFs++Q++RYEv+R+Ss+kKs++K+Li++ +tgg+++++
K10D3.3 221 NQVLVANFSQEQIERYEVYRKSSFKKSTIKRLINE---FTGGIDLGK 264
nvvIaisGlAKvFvGEiVEeArdVmd.feweesgrWmsrPiqPdHiReay
+v+Ia++GlAKv vGEiVEeA+d++d +e+e+++ P+qP+HiR+ay
K10D3.3 265 KVDIAVAGLAKVLVGEIVEEALDIRDlDEKEAKE-----PLQPHHIRQAY 309
rrL<-*
+rL
K10D3.3 310 LRL 312