Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K10D2.1
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Query: K10D2.1 CE02013 status:Partially_confirmed TR:Q09589 protein_id:AAA62539.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 88.2 2.6e-23 6
LRR Leucine Rich Repeat 64.9 1.6e-16 9
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LRR 1/9 15 32 .. 5 25 .] 2.6 73
LRR 2/9 33 54 .. 1 25 [] 13.9 0.045
LRR 3/9 55 76 .. 1 25 [] 13.3 0.068
LRR 4/9 77 98 .. 1 25 [] 11.2 0.27
LRR 5/9 99 120 .. 1 25 [] 5.9 8.3
LRR 6/9 121 142 .. 1 25 [] 9.7 0.69
LRR 7/9 143 164 .. 1 25 [] 7.9 2.2
LRR 8/9 165 186 .. 1 25 [] 10.0 0.59
LRR 9/9 187 208 .. 1 25 [] 13.1 0.074
WD40 1/6 294 323 .. 1 30 [. 3.3 38
WD40 2/6 366 390 .. 14 39 .] 22.2 0.00016
WD40 3/6 411 449 .. 1 39 [] 33.0 1.3e-07
WD40 4/6 454 492 .. 1 39 [] 13.4 0.052
WD40 5/6 548 599 .. 1 39 [] 14.9 0.019
WD40 6/6 615 641 .. 10 39 .] 9.1 0.87
Alignments of top-scoring domains:
LRR: domain 1 of 9, from 15 to 32: score 2.6, E = 73
*->LdLsgNnltgslppdafsgLt<-*
L+L+ N l+ +++ f+ Lt
K10D2.1 15 LSLRWNLLK-KIDH--FQCLT 32
LRR: domain 2 of 9, from 33 to 54: score 13.9, E = 0.045
*->nLreLdLsgNnltgslppdafsgLt<-*
+L++L+L++N+++ +l++ ++ L
K10D2.1 33 SLTRLNLNDNQIE-KLEN--LETLV 54
LRR: domain 3 of 9, from 55 to 76: score 13.3, E = 0.068
*->nLreLdLsgNnltgslppdafsgLt<-*
nL Ld+s+N++t +++ +s L
K10D2.1 55 NLVFLDVSYNRIT-KIEG--LSELI 76
LRR: domain 4 of 9, from 77 to 98: score 11.2, E = 0.27
*->nLreLdLsgNnltgslppdafsgLt<-*
nL+eL+L +N++ +++ ++ t
K10D2.1 77 NLEELHLVHNKII-TIEG--LETNT 98
LRR: domain 5 of 9, from 99 to 120: score 5.9, E = 8.3
*->nLreLdLsgNnltgslppdafsgLt<-*
++L++ +N+++ ++++ +s+L
K10D2.1 99 AMKYLEFGDNRIQ-KMEN--LSHLV 120
LRR: domain 6 of 9, from 121 to 142: score 9.7, E = 0.69
*->nLreLdLsgNnltgslppdafsgLt<-*
nL++L L N+++ +++ ++g+
K10D2.1 121 NLERLFLGANQIR-KIEG--LDGMA 142
LRR: domain 7 of 9, from 143 to 164: score 7.9, E = 2.2
*->nLreLdLsgNnltgslppdafsgLt<-*
+L+eL+L gN l+ ++ ++ L+
K10D2.1 143 QLKELSLPGNALQ-IIEG--LDTLS 164
LRR: domain 8 of 9, from 165 to 186: score 10.0, E = 0.59
*->nLreLdLsgNnltgslppdafsgLt<-*
L++++L N+++ +++ +sgLt
K10D2.1 165 GLKSISLAQNGIR-KIDG--LSGLT 186
LRR: domain 9 of 9, from 187 to 208: score 13.1, E = 0.074
*->nLreLdLsgNnltgslppdafsgLt<-*
nL++LdL++N ++ +l++ + ++
K10D2.1 187 NLKSLDLNDNIIE-KLEN--VEQFK 208
WD40: domain 1 of 6, from 294 to 323: score 3.3, E = 38
*->geclatl.gHtspvtcvafspdsgpylasgS<-*
+ + ++ t+++ +++++p+ g+ +++++
K10D2.1 294 VTSPTFVgHDTGSILAIDCHPS-GKKFITCG 323
[output cut off at A = 10 top alignments]