Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K10D2.1
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Query:  K10D2.1  CE02013    status:Partially_confirmed TR:Q09589 protein_id:AAA62539.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        88.2    2.6e-23   6
LRR      Leucine Rich Repeat                             64.9    1.6e-16   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR        1/9      15    32 ..     5    25 .]     2.6       73
LRR        2/9      33    54 ..     1    25 []    13.9    0.045
LRR        3/9      55    76 ..     1    25 []    13.3    0.068
LRR        4/9      77    98 ..     1    25 []    11.2     0.27
LRR        5/9      99   120 ..     1    25 []     5.9      8.3
LRR        6/9     121   142 ..     1    25 []     9.7     0.69
LRR        7/9     143   164 ..     1    25 []     7.9      2.2
LRR        8/9     165   186 ..     1    25 []    10.0     0.59
LRR        9/9     187   208 ..     1    25 []    13.1    0.074
WD40       1/6     294   323 ..     1    30 [.     3.3       38
WD40       2/6     366   390 ..    14    39 .]    22.2  0.00016
WD40       3/6     411   449 ..     1    39 []    33.0  1.3e-07
WD40       4/6     454   492 ..     1    39 []    13.4    0.052
WD40       5/6     548   599 ..     1    39 []    14.9    0.019
WD40       6/6     615   641 ..    10    39 .]     9.1     0.87

Alignments of top-scoring domains:
LRR: domain 1 of 9, from 15 to 32: score 2.6, E = 73
                   *->LdLsgNnltgslppdafsgLt<-*
                      L+L+ N l+ +++   f+ Lt
     K10D2.1    15    LSLRWNLLK-KIDH--FQCLT    32

LRR: domain 2 of 9, from 33 to 54: score 13.9, E = 0.045
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                      +L++L+L++N+++ +l++  ++ L
     K10D2.1    33    SLTRLNLNDNQIE-KLEN--LETLV    54

LRR: domain 3 of 9, from 55 to 76: score 13.3, E = 0.068
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                      nL  Ld+s+N++t +++   +s L
     K10D2.1    55    NLVFLDVSYNRIT-KIEG--LSELI    76

LRR: domain 4 of 9, from 77 to 98: score 11.2, E = 0.27
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                      nL+eL+L +N++  +++   ++  t
     K10D2.1    77    NLEELHLVHNKII-TIEG--LETNT    98

LRR: domain 5 of 9, from 99 to 120: score 5.9, E = 8.3
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                        ++L++ +N+++ ++++  +s+L
     K10D2.1    99    AMKYLEFGDNRIQ-KMEN--LSHLV    120

LRR: domain 6 of 9, from 121 to 142: score 9.7, E = 0.69
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                      nL++L L  N+++ +++   ++g+
     K10D2.1   121    NLERLFLGANQIR-KIEG--LDGMA    142

LRR: domain 7 of 9, from 143 to 164: score 7.9, E = 2.2
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                      +L+eL+L gN l+  ++   ++ L+
     K10D2.1   143    QLKELSLPGNALQ-IIEG--LDTLS    164

LRR: domain 8 of 9, from 165 to 186: score 10.0, E = 0.59
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                       L++++L  N+++ +++   +sgLt
     K10D2.1   165    GLKSISLAQNGIR-KIDG--LSGLT    186

LRR: domain 9 of 9, from 187 to 208: score 13.1, E = 0.074
                   *->nLreLdLsgNnltgslppdafsgLt<-*
                      nL++LdL++N ++ +l++   + ++
     K10D2.1   187    NLKSLDLNDNIIE-KLEN--VEQFK    208

WD40: domain 1 of 6, from 294 to 323: score 3.3, E = 38
                   *->geclatl.gHtspvtcvafspdsgpylasgS<-*
                       +  +  ++ t+++ +++++p+ g+ +++++
     K10D2.1   294    VTSPTFVgHDTGSILAIDCHPS-GKKFITCG    323

	[output cut off at A = 10 top alignments]


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