Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K10B2.2
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Query: K10B2.2 CE02009 Carboxypeptidase status:Partially_confirmed SW:Q09991 protein_id:AAA68259.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
serine_carbpept Serine carboxypeptidase 403.3 2.3e-117 1
abhydrolase alpha/beta hydrolase fold 7.1 0.33 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
abhydrolase 1/1 420 459 .. 194 232 .] 7.1 0.33
serine_carbpept 1/1 30 461 .. 1 507 [] 403.3 2.3e-117
Alignments of top-scoring domains:
abhydrolase: domain 1 of 1, from 420 to 459: score 7.1, E = 0.33
*->aseklsalipnaevvviddagHlallekpeevaeli.kfl<-*
++ ++++ +n+ + + ++gH++ ++kp+e ++i +f
K10B2.2 420 VAGFQTKFAGNVDFLTVRGSGHFVPEDKPKESQQMIfNFI 459
serine_carbpept: domain 1 of 1, from 30 to 461: score 403.3, E = 2.3e-117
*->PgllgilpnVDvkqYSGYltvndthgknlFYwffESrnDPkqdPvvl
Pgl p D+ +YSGYl++ + k+l+Yw+ ES + P qdP+vl
K10B2.2 30 PGLT-FTP--DFFHYSGYLRAWTD--KYLHYWLTESSRAPTQDPLVL 71
WLNGGPGCSSllGlfyEnGPfsIssdgSKSLpslslNPYSWnnvanmIYl
WLNGGPGCSSl+Gl +E+GPf++ g s+ +N+Y+Wn++an+++l
K10B2.2 72 WLNGGPGCSSLDGLIEELGPFHVKDFG----NSIYYNEYAWNKFANVLFL 117
DQPvGVGFSYsdsdddytttndveaakDlynfLqdFFqlFPellkndFyI
++P+GVG+SYs + t++ d e++ +y +L+dF+ +FPe++++dF I
K10B2.2 118 ESPAGVGYSYS-TNFNLTVS-DDEVSLHNYMALLDFLSKFPEYKGRDFWI 165
aGESYAGhYiPtfAseivqgnkknpgpniNLkGlaIGNGlTDpliQynay
+GESYAG+YiPt+A++i++ ++ N+kG+aIGNG ++yn
K10B2.2 166 TGESYAGVYIPTLAVRILN----DKKNFPNFKGVAIGNGALNFPNNYNTM 211
vpfayehggelsvLiseeyskisksfprClaaikaCqgsnsdnsctnati
vpf y+h+ L ++++ + C+ n+ + +i
K10B2.2 212 VPFYYYHA-----LVRDDLYND---------IARNCCN----NNIGTCDI 243
vYPiWRPEYnFsCntallkpessvGkdglNvYdirepCegsslskfvklk
+ F n + +++G+ lN Y++++ C+ +
K10B2.2 244 Y------SKFFDPNCRDKVINALDGTNELNMYNLYDVCYYN--------- 278
etklvqsfdnlgttlkpvkvrpralmrawdlrakvkarr...dplCypnl
t+ ++k + + +mr + +k + +++plC +
K10B2.2 279 ------------PTTNLKKAFIERQMRIAVGLPARKHNAattVPLCAQTN 316
sySGVPCmSDevlskYLnnpdVrkAlgagrleyqstswdgCnfdvyqkfl
+ YLn+ dVrk+l+ ++++ + w C++ v ++++
K10B2.2 317 N-----------THVYLNRADVRKSLH--IPSSLP-AWEECSDQVGKNYV 352
dtgdwmrsflvkllslLeqgyrvLiYAGDlDmiCNwlGneawvnslewsG
t ++++ ++ ++ g+++L+Y+GD+D +CN +n+ ++ sl++
K10B2.2 353 VTHFNVIPEFQTMIA---AGIKILVYNGDVDTACNSIMNQQFLTSLNLT- 398
kkqFqasswrPWlvdgadseqvaGfvktyekhltFltvrgAGHmVPydkP
+ q+ W+ g ++ vaGf ++ + Fltvrg GH VP+dkP
K10B2.2 399 VLGEQEKVNEAWHYSGQTGTAVAGFQTKFAGNVDFLTVRGSGHFVPEDKP 448
qaALqmvkrwiaG<-*
+++ qm ++i++
K10B2.2 449 KESQQMIFNFINN 461