Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K10B2.2
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Query:  K10B2.2  CE02009   Carboxypeptidase status:Partially_confirmed SW:Q09991 protein_id:AAA68259.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
serine_carbpept Serine carboxypeptidase                 403.3   2.3e-117   1
abhydrolase     alpha/beta hydrolase fold                 7.1       0.33   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
abhydrolase       1/1     420   459 ..   194   232 .]     7.1     0.33
serine_carbpept   1/1      30   461 ..     1   507 []   403.3 2.3e-117

Alignments of top-scoring domains:
abhydrolase: domain 1 of 1, from 420 to 459: score 7.1, E = 0.33
                   *->aseklsalipnaevvviddagHlallekpeevaeli.kfl<-*
                      ++ ++++  +n+ +  + ++gH++ ++kp+e  ++i +f
     K10B2.2   420    VAGFQTKFAGNVDFLTVRGSGHFVPEDKPKESQQMIfNFI    459

serine_carbpept: domain 1 of 1, from 30 to 461: score 403.3, E = 2.3e-117
                   *->PgllgilpnVDvkqYSGYltvndthgknlFYwffESrnDPkqdPvvl
                      Pgl    p  D+ +YSGYl++  +  k+l+Yw+ ES + P qdP+vl
     K10B2.2    30    PGLT-FTP--DFFHYSGYLRAWTD--KYLHYWLTESSRAPTQDPLVL 71

                   WLNGGPGCSSllGlfyEnGPfsIssdgSKSLpslslNPYSWnnvanmIYl
                   WLNGGPGCSSl+Gl +E+GPf++   g     s+ +N+Y+Wn++an+++l
     K10B2.2    72 WLNGGPGCSSLDGLIEELGPFHVKDFG----NSIYYNEYAWNKFANVLFL 117

                   DQPvGVGFSYsdsdddytttndveaakDlynfLqdFFqlFPellkndFyI
                   ++P+GVG+SYs +    t++ d e++  +y +L+dF+ +FPe++++dF I
     K10B2.2   118 ESPAGVGYSYS-TNFNLTVS-DDEVSLHNYMALLDFLSKFPEYKGRDFWI 165

                   aGESYAGhYiPtfAseivqgnkknpgpniNLkGlaIGNGlTDpliQynay
                   +GESYAG+YiPt+A++i++     ++   N+kG+aIGNG     ++yn
     K10B2.2   166 TGESYAGVYIPTLAVRILN----DKKNFPNFKGVAIGNGALNFPNNYNTM 211

                   vpfayehggelsvLiseeyskisksfprClaaikaCqgsnsdnsctnati
                   vpf y+h+     L  ++++            +  C+     n+  + +i
     K10B2.2   212 VPFYYYHA-----LVRDDLYND---------IARNCCN----NNIGTCDI 243

                   vYPiWRPEYnFsCntallkpessvGkdglNvYdirepCegsslskfvklk
                   +         F  n     + +++G+  lN Y++++ C+ +
     K10B2.2   244 Y------SKFFDPNCRDKVINALDGTNELNMYNLYDVCYYN--------- 278

                   etklvqsfdnlgttlkpvkvrpralmrawdlrakvkarr...dplCypnl
                                t+ ++k + + +mr   +   +k +  +++plC  +
     K10B2.2   279 ------------PTTNLKKAFIERQMRIAVGLPARKHNAattVPLCAQTN 316

                   sySGVPCmSDevlskYLnnpdVrkAlgagrleyqstswdgCnfdvyqkfl
                   +              YLn+ dVrk+l+  ++++ +  w  C++ v ++++
     K10B2.2   317 N-----------THVYLNRADVRKSLH--IPSSLP-AWEECSDQVGKNYV 352

                   dtgdwmrsflvkllslLeqgyrvLiYAGDlDmiCNwlGneawvnslewsG
                    t  ++++  ++ ++    g+++L+Y+GD+D +CN  +n+ ++ sl++
     K10B2.2   353 VTHFNVIPEFQTMIA---AGIKILVYNGDVDTACNSIMNQQFLTSLNLT- 398

                   kkqFqasswrPWlvdgadseqvaGfvktyekhltFltvrgAGHmVPydkP
                     + q+     W+  g  ++ vaGf  ++  +  Fltvrg GH VP+dkP
     K10B2.2   399 VLGEQEKVNEAWHYSGQTGTAVAGFQTKFAGNVDFLTVRGSGHFVPEDKP 448

                   qaALqmvkrwiaG<-*
                   +++ qm  ++i++
     K10B2.2   449 KESQQMIFNFINN    461



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