Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K09F6.3
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Query: K09F6.3 CE31563 protein-tyrosine phosphatase status:Partially_confirmed TR:O16728 protein_id:AAB66199.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 236.5 3.8e-67 1
WSN Domain of unknown function 70.6 2.8e-18 1
DUF375 Domain of unknown function (DUF375) 4.7 3.8 1
dTDP_sugar_isom dTDP-4-dehydrorhamnose 3,5-epimerase 2.9 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WSN 1/1 1 60 [. 10 72 .] 70.6 2.8e-18
DUF375 1/1 174 200 .. 196 227 .. 4.7 3.8
dTDP_sugar_isom 1/1 737 759 .. 157 181 .] 2.9 10
Y_phosphatase 1/1 818 1106 .. 1 274 [] 236.5 3.8e-67
Alignments of top-scoring domains:
WSN: domain 1 of 1, from 1 to 60: score 70.6, E = 2.8e-18
*->lsilaRVtNAIsLqaglingsiksddvIaELLniGtinpsqlselin
+++++R++N+I+L a+l++g+ + +d+IaE++n ++p++ ++l++
K09F6.3 1 MQKISRIVNSIYLTAELTAGTANTYDLIAEFFN---FGPDSYNKLQS 44
vdlkkiveglngLkei<-*
+d+k +++gl+++++i
K09F6.3 45 IDMKELKSGLEEIVSI 60
DUF375: domain 1 of 1, from 174 to 200: score 4.7, E = 3.8
*->aadgpgeeelvknalEeadeykdlGARLVfeG<-*
+++ +++ e+++n++E+ d++++ + G
K09F6.3 174 SINSFDDFEKIRNPSEFVDPISKI-----VSG 200
dTDP_sugar_isom: domain 1 of 1, from 737 to 759: score 2.9, E = 10
*->PladtpelspvLSeKDanaplLaea<-*
++ +tp+++ +S D++ p++++a
K09F6.3 737 KIITTPAPI--VSSSDIRSPTIEDA 759
Y_phosphatase: domain 1 of 1, from 818 to 1106: score 236.5, E = 3.8e-67
*->NkeKNRykdilpyDhtRVkLk........egsDYINAnyidgpqsrt
e Ry+d+l+ ++R+ + ++ ++ + + YINAny++ p
K09F6.3 818 YSEQDRYSDVLCGMDNRILIDedvcrrcyFKDQYINANYLELP---- 860
lvvykkpkayIaTQgPlp..............................nT
+++++I+TQ+P+ ++++ ++++++++++ + ++++++ + T
K09F6.3 861 -----NGNRMILTQAPMSrtehfkpekdkkrknlyslsdeeeeisylvQT 905
ieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqYWPeeggeeggslty
++ F + + + +++v++ML++++E+g eK C+ Y+P+ e++g++++
K09F6.3 906 VDKFYQTIVQTGTEVVAMLCDFNEEGV--EK-CSSYFPL---EKDGKQKF 949
GditVtlvseekkddddytvRtleltn.gdeskneakqeklkgetrtVth
++ V ++++++ + +d+++Rtl++t +e k++t+tV+h
K09F6.3 950 HNVNVCTTNVQH-PSADVVLRTLVITSyLGE----------KKKTHTVKH 988
yhytgWPDhgvPesgpkslldflrkvrksqsqenesgeaspdsgprSsct
y y+gW + ++Pe p+ +l++ r r+s+s
K09F6.3 989 YSYKGWIEKNAPEL-PREILNIFRVARNSKS------------------- 1018
gPivVHCSAGiGRTGtfiaid....................illqqleae
vVHCS+GiGR+++f+ + + + + + + + + + +++
K09F6.3 1019 --LVVHCSNGIGRSAAFVSWElcyhfvpvnfeicdfsvaefVYQKMIRSL 1066
gvv....idifdivkelRsqRpgmVQteeQYiFiydaile<-*
+++++ + d + ++ elR++Rp ++ t++Q+ F ++++l+
K09F6.3 1067 DTTstvnLDFLSLLTELRHSRPRAIHTPMQLAFSIMMVLD 1106