Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K09E2.4
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Query: K09E2.4 CE02817 status:Partially_confirmed TR:Q21391 protein_id:AAC46575.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
fn3 Fibronectin type III domain 51.6 1.9e-13 2
ig Immunoglobulin domain 51.4 1.4e-12 4
synaptobrevin Synaptobrevin 4.5 9.4 1
PsbI Photosystem II reaction center I protei 4.5 8.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ig 1/4 45 106 .. 1 50 [] 9.3 0.65
ig 2/4 196 217 .. 29 50 .] 5.8 6.2
ig 3/4 315 333 .. 32 50 .] 8.0 1.4
ig 4/4 483 539 .. 1 50 [] 28.4 3.3e-06
fn3 1/2 590 668 .. 12 84 .] 16.1 0.0035
fn3 2/2 685 772 .. 1 84 [] 35.5 8.4e-09
synaptobrevin 1/1 895 921 .. 63 89 .] 4.5 9.4
PsbI 1/1 900 934 .. 1 36 [] 4.5 8.7
Alignments of top-scoring domains:
ig: domain 1 of 4, from 45 to 106: score 9.3, E = 0.65
*->GesvtLtCsvs..gfgpp.p.vtWlrngk.le.......tsslslti
+ +LtC+ s + + +v Wl++ + + ++++ + ++ lti
K09E2.4 45 KNATNLTCELSagYSEARmQsVVWLKDREiISindtdytWKGFILTI 91
.svtpeDsgGtYtCvv<-*
+ ++p + G+Y C +
K09E2.4 92 hGTRPQNE-GEYQCLA 106
ig: domain 2 of 4, from 196 to 217: score 5.8, E = 6.2
*->sslslti.svtpeDsgGtYtCvv<-*
+++ ++i+ v+p+D+ G+Y C v
K09E2.4 196 TDSGMQIsLVNPSDA-GFYHCIV 217
ig: domain 3 of 4, from 315 to 333: score 8.0, E = 1.4
*->slti.svtpeDsgGtYtCvv<-*
+l i+sv +Ds G+YtC
K09E2.4 315 NLKIrSVALGDS-GIYTCLG 333
ig: domain 4 of 4, from 483 to 539: score 28.4, E = 3.3e-06
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le........tsslslti.
G+++ ++C v +W +n+++l +++++ +s sl+i+
K09E2.4 483 GQTADFQCLVQ----RvKaRSWMKNNRtLSlftsrrtiVGSNSLRIs 525
svtpeDsgGtYtCvv<-*
+v+ +D+ G YtCv+
K09E2.4 526 KVELSDE-GMYTCVA 539
fn3: domain 1 of 2, from 590 to 668: score 16.1, E = 0.0035
*->vtstsltlsWsppt...gngpitgYevtyRqpkngge..wnelt.vp
vt t+++++Ws + +i+++ ++ q ++ e++w e ++v+
K09E2.4 590 VTGTEVRIQWSVLGkivALTKISKFLIET-QRFGTSEenWIEADtVD 635
gtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
++ + t++ L P+ +Y++r++ + ++G+ S
K09E2.4 636 SHVRATTIKSLIPDNKYKFRIKMIRDDGsHVLS 668
fn3: domain 2 of 2, from 685 to 772: score 35.5, E = 8.4e-09
*->PsaPtnltvtdvtstsltlsWsppt..gngpitgYevtyRqpkngge
P aP+ l+v +s+s+ + +s+ + n+ + + y ++ +++
K09E2.4 685 PLAPKILSVHQHSSDSAKVFFSHNApiENAAAKTFVIVY-NEV-SPD 729
...wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
+++ + ++v+gt t++++tgL+ +t+Y+++ +A n++G++ S
K09E2.4 730 qnkSQVVQVDGTPTEAIITGLVFDTQYSIQMIAENAAGkSLTS 772
synaptobrevin: domain 1 of 1, from 895 to 921: score 4.5, E = 9.4
*->wknmKlkiivglvvvlllliiivylcg<-*
+kn++l i++++ +++l + ++++c+
K09E2.4 895 FKNIALGGIITFLALIILFVCFFVFCN 921
PsbI: domain 1 of 1, from 900 to 934: score 4.5, E = 8.7
*->mltLkifvYavvilFvsLFiFGfLsnDpgRnPgrke<-*
l i a++ilFv F+F L + R+ ++ +
K09E2.4 900 -LGGIITFLALIILFVCFFVFCNLRSGDKRQKSQAN 934