Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K09C4.1
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Query: K09C4.1 CE04729 glucose transporter status:Partially_confirmed TR:Q21385 protein_id:AAA83627.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sugar_tr Sugar (and other) transporter 23.8 4.2e-06 1
IspA Intacellular septation protein A 7.4 0.7 1
RICH RICH domain 3.8 8.4 1
FliD Flagellar hook-associated protein 2 1.6 7.5 1
Amelin Ameloblastin precursor (Amelin) 1.0 8.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FliD 1/1 30 42 .. 726 738 .] 1.6 7.5
Amelin 1/1 183 202 .. 1 21 [. 1.0 8.4
RICH 1/1 215 246 .. 1 31 [. 3.8 8.4
IspA 1/1 446 456 .. 175 185 .] 7.4 0.7
sugar_tr 1/1 137 468 .. 132 488 .] 23.8 4.2e-06
Alignments of top-scoring domains:
FliD: domain 1 of 1, from 30 to 42: score 1.6, E = 7.5
*->FtamDtlmgkmne<-*
F+a+ +l+++mn+
K09C4.1 30 FSALAELVNQMNN 42
Amelin: domain 1 of 1, from 183 to 202: score 1.0, E = 8.4
*->msAsKiPLFKmKdliLiLcLl<-*
s iPLF m ++iLcL+
K09C4.1 183 -SWFIIPLFEMVCSVMILCLM 202
RICH: domain 1 of 1, from 215 to 246: score 3.8, E = 8.4
*->dderkKakdeVeeYleK.iLseIkkqLdKrkH<-*
++ kKa+d ++ Y+ K+ L+e+ ++L K+k+
K09C4.1 215 QNKVKKAEDSIKFYYGKhFLDEVVTSLIKEKN 246
IspA: domain 1 of 1, from 446 to 456: score 7.4, E = 0.7
*->giylyrhllkd<-*
giylyrh++++
K09C4.1 446 GIYLYRHMPET 456
sugar_tr: domain 1 of 1, from 137 to 468: score 23.8, E = 4.2e-06
*->lvPmYisEiAPkalRGalgslyqlaitiG..ilvAaiiglglnktnn
++PmYi E AP + RG+ + ++ +iG+ +++a + +l+++ +
K09C4.1 137 ITPMYILECAPDNCRGFASTALIFSFSIGklLMFSAASPTFLGTIDS 183
dsalnswgWRiplglqlvpalllligllflPESPRwLvekgkleeArevL
W i +++v +++ l ++ lP+SP wL+ + k+ +A+ ++
K09C4.1 184 --------WFIIPLFEMVCSVMILCLMIHLPDSPKWLIQQNKVKKAEDSI 225
aklrgv...edvdqeiqeikaeleatvseekagkaswgelfrgrtrpkvr
+ g + ++v +++++k ++ + ++s ++++++ t +r
K09C4.1 226 KFYYGKhflDEVVTSLIKEKNLTKDN-------RISLRQIWENDT---LR 265
qrllmgvmlqafqQltGiNaifYYsptifksvGvsdsvasllvtiivgvv
l +++++++f+Q+ a +Y + k++G++ a l +++i+ v
K09C4.1 266 ESLKILFAVTVFLQFDTTTAQSVYTIDFHKTAGFTVQEA-LNINLILTTV 314
NfvfTfvaLiflvDrfGRR.pllllGaagmaicflilgasigvallllnk
f + f++ ++ D +GRR+ + + G + +l+l+ + +l+
K09C4.1 315 LFPTKFIG-TLFLDALGRRpAMGVAGVMKYSKSMLLLA-----FEILVFI 358
pkdpsskaagivaivfi.llfiafFalgwGpipwvilsElFPtkvRsk..
+ +s+ + ++ v+++ll i + +g++ i + ++ElFP++ R++ +
K09C4.1 359 S---GSSLITKIMYVAVeLLTILVPVTGANSIRVLFVTELFPPSARTAvg 405
.alalataanwlanfiigflfpyitgaiglalggyvflvfagllvlfilf
+a+ + + n i l+p++ + + +f f++ +f ++
K09C4.1 406 qAMLFGSM---AVNSPIVALYPIVNSIFP----PIFFVPFVISQMIFGIY 448
vfffvPETkGrtLEeieelf<-*
+ +PET+Gr + i e +
K09C4.1 449 LYRHMPETRGRAVYDIIESL 468