Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K09A9.6
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Query: K09A9.6 CE11982 aspartyl beta hydroxylase like status:Confirmed TR:Q93178 protein_id:CAB01887.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Asp_Arg_Hydrox Aspartyl/Asparaginyl beta-hydroxylase 439.7 2.5e-128 1
TPR TPR Domain 20.0 0.0007 4
FrhB_FdhB_C Coenzyme F420 hydrogenase/dehydrogenas 3.9 4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TPR 1/4 466 484 .. 16 34 .] 4.0 26
FrhB_FdhB_C 1/1 501 518 .. 172 195 .] 3.9 4
TPR 2/4 492 520 .. 1 29 [. 2.2 82
TPR 3/4 571 597 .. 8 34 .] 6.3 5.7
TPR 4/4 636 662 .. 1 27 [. 7.8 2.1
Asp_Arg_Hydrox 1/1 636 871 .. 1 264 [] 439.7 2.5e-128
Alignments of top-scoring domains:
TPR: domain 1 of 4, from 466 to 484: score 4.0, E = 26
*->kydeAieayekALeldPnn<-*
+y+eA e ++ ++++ P +
K09A9.6 466 QYEEAMELFDHVIAVYPAS 484
FrhB_FdhB_C: domain 1 of 1, from 501 to 518: score 3.9, E = 4
*->iEikeiieLRkgdvkpgleiveKL<-*
iE +e+ d+ + +ei+eK+
K09A9.6 501 IEADET------DRDKAIEIYEKI 518
TPR: domain 2 of 4, from 492 to 520: score 2.2, E = 82
*->aeayynlGnaylklgkydeAieayekALe<-*
a+ay +G + + d+Aie yek L+
K09A9.6 492 ARAYDIRGEIEADETDRDKAIEIYEKILQ 520
TPR: domain 3 of 4, from 571 to 597: score 6.3, E = 5.7
*->GnaylklgkydeAieayekALeldPnn<-*
+ + +++y++A ++ +L+ dPn+
K09A9.6 571 AISFVMMKRYEDARTVLKNVLANDPNH 597
TPR: domain 4 of 4, from 636 to 662: score 7.8, E = 2.1
*->aeayynlGnaylklgkydeAieayekA<-*
++ yy+lG+ + lg+ eA + y+kA
K09A9.6 636 PKFYYQLGHGLTTLGRKSEADAVYQKA 662
Asp_Arg_Hydrox: domain 1 of 1, from 636 to 871: score 439.7, E = 2.5e-128
*->gkfYaslgdalsrlgqkfRGreakrlyrqavdhgtfmapiAETqrsl
+kfY++lg++l++lg+k +ea+++y++a+++g+fm+++ qrsl
K09A9.6 636 PKFYYQLGHGLTTLGRK---SEADAVYQKAAQMGVFMTAQ---QRSL 676
ynvssLparaPywdpsafgftpelkkLerNWqtIRdEalaLldegdirpg
yn+++L++r ++w++++++++++lk++er+W+tIR+E++++l++ ++ +
K09A9.6 677 YNIEGLTGR-AWWAMDQTPYSKFLKTVERQWATIRQEGMEVLKD--CS-D 722
aflpedAGfnlffkggWkrFyLkwygravpsAcrrcPkTtaLLaeiPevk
++l+++ ++l+++g+Wk+F++++++++++s+c+r+P+T+ +L+e+++++
K09A9.6 723 CWLDHN--QQLVIDGQWKFFPIMSEQNFIKSSCERMPQTCLILQEFAASS 770
gArrGqvmfSvLpPGtShivpHGTVDSrGPtngrLRvHLGLvtPngekGR
+A+++++++SvL++G+ +i+pH +GPtn++L++HLGLv+P++
K09A9.6 771 NASKSDMHLSVLSSGA-SILPH-----CGPTNYHLQAHLGLVSPSE---- 810
PAcfirVggerktWrdGecliFDDsFeHevwndgstedqtRlvLfvDvwh
++irVg+e+k+Wr+G+++i+DDsFeHe+++dg++++++RlvL++++wh
K09A9.6 811 --ARIRVGNETKGWRSGKFIIYDDSFEHELQFDGASSSSFRLVLTIQLWH 858
PelapwatalrraLsai<-*
Pe++p ++r +Ls+
K09A9.6 859 PEVQP---HQR-VLSFL 871