Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K08F8.1
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Query: K08F8.1 CE03467 ribosomal S6 kinase status:Confirmed TR:Q21360 protein_id:CAA91283.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 219.5 5.1e-62 1
HECT HECT-domain (ubiquitin-transferase) 3.4 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HECT 1/1 374 396 .. 1 26 [. 3.4 5.9
pkinase 1/1 144 405 .. 1 294 [] 219.5 5.1e-62
Alignments of top-scoring domains:
HECT: domain 1 of 1, from 374 to 396: score 3.4, E = 5.9
*->flvSkemFnpmyglffyspesdRytl<-*
vSk+ ++ +l++++p sdR t+
K08F8.1 374 --VSKDTKDDIRCLLRTNP-SDRLTI 396
pkinase: domain 1 of 1, from 144 to 405: score 219.5, E = 5.1e-62
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
e++G G +GkV ++ k tg+++A+K+l+ ++++ +r
K08F8.1 144 TISAEIIGIGESGKVMACYQK-VTGEKFALKVLR--DSQKA----RR 183
EiqilkrLs.HpNIvrligvfed...tddhlylvmEymegGdLfdylrrn
E++++ + H+N+v +++++e++ + + l +v E++egGdL++ + ++
K08F8.1 184 EVELHWLTNaHENVVSILDIYENtfdNVKCLLMVVEFLEGGDLLSQFESQ 233
g.gplsekeakkialQilrGleYLHsngivHRDLKpeNILlden..dgtv
g++p++ek + i++Qi +++ YLH+++i HRD+K eNIL++ +++ +
K08F8.1 234 GsIPYTEKKVGEIIRQIGNAVMYLHDMNIAHRDIKLENILCSGTgdNCVY 283
KiaDFGLArllesssklttfvGTpwYmmAPEvilegrgysskvDvWSlGv
K++D G+A+ e+++ + + ++Tp+Y +PEv l + y++ +D+WSlGv
K08F8.1 284 KLGDYGFAKRPERNVLMESPCCTPFYA-PPEV-LGRERYDKSCDMWSLGV 331
iLyElltggplfpgadlpaftggdevdqliifvlklPfsdelp.ktridp
+y ll+g +Pf+ + + +
K08F8.1 332 AMYILLCG--------------------------YPPFYSMKGvALSPGM 355
leelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatakeil
+++ + ++ ++ + ++ +S++ kd ++++L+ +Ps+R+ t++e++
K08F8.1 356 RSRIANAYYA--FPHEEWDCVSKDTKDDIRCLLRTNPSDRL---TIHELM 400
nhpwf<-*
+ p +
K08F8.1 401 ATPLV 405