Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K08F8.1
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Query:  K08F8.1  CE03467   ribosomal S6 kinase status:Confirmed TR:Q21360 protein_id:CAA91283.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
pkinase  Protein kinase domain                          219.5    5.1e-62   1
HECT     HECT-domain (ubiquitin-transferase)              3.4        5.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HECT       1/1     374   396 ..     1    26 [.     3.4      5.9
pkinase    1/1     144   405 ..     1   294 []   219.5  5.1e-62

Alignments of top-scoring domains:
HECT: domain 1 of 1, from 374 to 396: score 3.4, E = 5.9
                   *->flvSkemFnpmyglffyspesdRytl<-*
                        vSk+  ++  +l++++p sdR t+
     K08F8.1   374    --VSKDTKDDIRCLLRTNP-SDRLTI    396

pkinase: domain 1 of 1, from 144 to 405: score 219.5, E = 5.1e-62
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
                          e++G G +GkV  ++ k  tg+++A+K+l+  ++++     +r
     K08F8.1   144    TISAEIIGIGESGKVMACYQK-VTGEKFALKVLR--DSQKA----RR 183

                   EiqilkrLs.HpNIvrligvfed...tddhlylvmEymegGdLfdylrrn
                   E++++   + H+N+v +++++e++ +  + l +v E++egGdL++ + ++
     K08F8.1   184 EVELHWLTNaHENVVSILDIYENtfdNVKCLLMVVEFLEGGDLLSQFESQ 233

                   g.gplsekeakkialQilrGleYLHsngivHRDLKpeNILlden..dgtv
                   g++p++ek +  i++Qi +++ YLH+++i HRD+K eNIL++  +++ +
     K08F8.1   234 GsIPYTEKKVGEIIRQIGNAVMYLHDMNIAHRDIKLENILCSGTgdNCVY 283

                   KiaDFGLArllesssklttfvGTpwYmmAPEvilegrgysskvDvWSlGv
                   K++D G+A+  e+++ + + ++Tp+Y  +PEv l +  y++ +D+WSlGv
     K08F8.1   284 KLGDYGFAKRPERNVLMESPCCTPFYA-PPEV-LGRERYDKSCDMWSLGV 331

                   iLyElltggplfpgadlpaftggdevdqliifvlklPfsdelp.ktridp
                    +y ll+g                           +Pf+ +     +  +
     K08F8.1   332 AMYILLCG--------------------------YPPFYSMKGvALSPGM 355

                   leelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatakeil
                    +++ + ++   ++ + ++ +S++ kd ++++L+ +Ps+R+   t++e++
     K08F8.1   356 RSRIANAYYA--FPHEEWDCVSKDTKDDIRCLLRTNPSDRL---TIHELM 400

                   nhpwf<-*
                   + p +
     K08F8.1   401 ATPLV    405



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