Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K08E4.6
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Query: K08E4.6 CE06146 emp24\/gp25L\/p24 family status:Confirmed TR:Q21336 protein_id:CAA92683.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
EMP24_GP25L emp24/gp25L/p24 family 263.0 4e-75 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
EMP24_GP25L 1/1 8 224 .. 1 225 [] 263.0 4e-75
Alignments of top-scoring domains:
EMP24_GP25L: domain 1 of 1, from 8 to 224: score 263.0, E = 4e-75
*->mlslllllalvtsvdsaltFylpagekkEqvCfyedlpkgd.tlltg
++++ll++++++++++++t+++pag+++ Cf+++++ ++++l++
K08E4.6 8 ITVILLITPFILCGEYDFTVEVPAGKFQ---CFFQPVDLAKhKTLEV 51
dyqvqqggdldidLtydfeitapdgktiyveerfdnNHlvlhqkysssGd
dyqv++ggdl+i +f+i ++++++++++ ++d G+
K08E4.6 52 DYQVIDGGDLNI----NFMILHGANILKQDQLKVD-------------GS 84
ftFtahesGeykiCFeNnsstispkvavfkirleleigvg.......kea
++++++++G+y++CF+N++s++s+kv++f+i+l++ +g++++ + + +++
K08E4.6 85 HRIELNQPGDYQVCFDNSFSYQSRKVVFFEIFLFDAHGNLdeadlsaMAR 134
kdyldsakk....ekldsleervreLetrleeIkkeQnYlRaREerfRnt
+d++ sak+++ ++++d++++r + ++++l++++++Q++lRa+E+r+R++
K08E4.6 135 TDSDLSAKMnelgVTIDEFHRRANGIKNNLNKVEYHQALLRAHEARDRAV 184
sESTNsRVvwWSifqilvLvglsiwQvfyLkrFFekkklv<-*
++++++RV++WS++++lv+vg++++Qvf+++++Fe+++++
K08E4.6 185 MSANFDRVTFWSVVHTLVMVGVAGVQVFMIRSLFEENSKI 224