Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K08E4.6
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Query:  K08E4.6  CE06146   emp24\/gp25L\/p24 family status:Confirmed TR:Q21336 protein_id:CAA92683.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
EMP24_GP25L emp24/gp25L/p24 family                      263.0      4e-75   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
EMP24_GP25L   1/1       8   224 ..     1   225 []   263.0    4e-75

Alignments of top-scoring domains:
EMP24_GP25L: domain 1 of 1, from 8 to 224: score 263.0, E = 4e-75
                   *->mlslllllalvtsvdsaltFylpagekkEqvCfyedlpkgd.tlltg
                      ++++ll++++++++++++t+++pag+++   Cf+++++  ++++l++
     K08E4.6     8    ITVILLITPFILCGEYDFTVEVPAGKFQ---CFFQPVDLAKhKTLEV 51

                   dyqvqqggdldidLtydfeitapdgktiyveerfdnNHlvlhqkysssGd
                   dyqv++ggdl+i    +f+i ++++++++++ ++d             G+
     K08E4.6    52 DYQVIDGGDLNI----NFMILHGANILKQDQLKVD-------------GS 84

                   ftFtahesGeykiCFeNnsstispkvavfkirleleigvg.......kea
                   ++++++++G+y++CF+N++s++s+kv++f+i+l++ +g++++ + + +++
     K08E4.6    85 HRIELNQPGDYQVCFDNSFSYQSRKVVFFEIFLFDAHGNLdeadlsaMAR 134

                   kdyldsakk....ekldsleervreLetrleeIkkeQnYlRaREerfRnt
                   +d++ sak+++ ++++d++++r + ++++l++++++Q++lRa+E+r+R++
     K08E4.6   135 TDSDLSAKMnelgVTIDEFHRRANGIKNNLNKVEYHQALLRAHEARDRAV 184

                   sESTNsRVvwWSifqilvLvglsiwQvfyLkrFFekkklv<-*
                   ++++++RV++WS++++lv+vg++++Qvf+++++Fe+++++
     K08E4.6   185 MSANFDRVTFWSVVHTLVMVGVAGVQVFMIRSLFEENSKI    224



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