hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K08E3.6
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Query:  K08E3.6  CE18872  locus:cyk-4 Phorbol esters\/diacylglycerol binding domain (C1 domain), GTPase-activator protein for Rho-like GTPases s

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
RhoGAP        RhoGAP domain                             126.4    1.8e-34   1
DAG_PE-bind   Phorbol esters/diacylglycerol binding d    21.4    0.00057   1
zf-AN1        AN1-like Zinc finger                        4.3        8.5   1
SBP_bac_7     Bacterial extracellular solute-binding      3.1        7.2   1
DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A      1.5        6.5   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
DNA_topoisoIV   1/1      39    77 ..   456   492 .]     1.5      6.5
SBP_bac_7       1/1      87   152 ..   229   298 .]     3.1      7.2
zf-AN1          1/1     365   383 ..     1    19 [.     4.3      8.5
DAG_PE-bind     1/1     352   399 ..     1    51 []    21.4  0.00057
RhoGAP          1/1     437   588 ..     1   170 []   126.4  1.8e-34

Alignments of top-scoring domains:
DNA_topoisoIV: domain 1 of 1, from 39 to 77: score 1.5, E = 6.5
                   *->eLeeeIaeLekiLas.E.seerllkiireELeeikkkfg<-*
                      +L +eI++L+k+ +++E+s++rl++++re  e+++k  +
     K08E3.6    39    HLIDEIERLRKLWKDsEeSKKRLNADMREAEEALAKARK    77

SBP_bac_7: domain 1 of 1, from 87 to 152: score 3.1, E = 7.2
                   *->eelqaileeAakEAteyqrklaeektlnlkekellkaagkgtevivl
                      +++q+ l+  + E  ++  +l++    +  ek+l+ a+++   +  l
     K08E3.6    87    KDTQKHLRALMEENKALKLDLNVY---ETREKQLKDAMKN-GIFNSL 129

                   tpedreafrealkpvykefekei<-*
                   t+edr +f+   +p+++ + k++
     K08E3.6   130 TKEDRDQFKFLHEPLVRTYSKRV    152

zf-AN1: domain 1 of 1, from 365 to 383: score 4.3, E = 8.5
                   *->CdvCgKkvgLAtpFhCkYC<-*
                      Cd+C   + LAt+++C+ C
     K08E3.6   365    CDKCATALKLATSMKCRDC    383

DAG_PE-bind: domain 1 of 1, from 352 to 399: score 21.4, E = 0.00057
                   *->HrFkrttfyksptfCdhCgellwglakQGlkCsnCglnvHkrChekV
                      H F+     k    Cd C+  l+    + +kC++C+ +vH  C+ k+
     K08E3.6   352    HTFIEAGI-KAMRKCDKCATALKLA--TSMKCRDCHQVVHRSCCNKL 395

                   ptnC<-*
                     +C
     K08E3.6   396 HLPC    399

RhoGAP: domain 1 of 1, from 437 to 588: score 126.4, E = 1.8e-34
                   *->PiivekcveyIeklYPLaerGlqeEGIYRvsGsasrvkeLreafdkd
                      P+ v +cv ++e+      rGl +EGIYRv+G+ + v+ L +++ +
     K08E3.6   437    PAAVIHCVVALEA------RGLTQEGIYRVPGQVRTVNVLLDELRSK 477

                   gapdslelsekewfDvhvvaglLKlYLReLPePLipydlyeefiraakeq
                     +++++ +     Dv v+++ LK++LR+L +PLip    +e+i+aa+
     K08E3.6   478 --TVPNVGLH----DVEVITDTLKRFLRDLKDPLIPRTSRQELIVAANLY 521

                   iedpderlralkellsSkLPrahynTLryLltHLnrvaeiyiensavNkM
                   ++dpd+   al++++  +LP+a+++TL yL+ H+++v++     s+ NkM
     K08E3.6   522 STDPDNGRLALNRVIC-ELPQANRDTLAYLFIHWRKVIA----QSSRNKM 566

                   narNLAivFgPtLlrppdkesnd<-*
                   n+++ A + +P  +  p k s +
     K08E3.6   567 NCEAMARMVAPAVMGHPVKQS-Q    588

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