Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K07F5.8
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Query: K07F5.8 CE23859 protein-tyrosine phosphatase status:Partially_confirmed TR:Q21297 protein_id:CAA94284.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 332.5 4.8e-96 1
DSPc Dual specificity phosphatase, catalytic 17.5 0.0013 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DSPc 1/1 177 209 .. 93 125 .. 17.5 0.0013
Y_phosphatase 1/1 18 256 .. 1 274 [] 332.5 4.8e-96
Alignments of top-scoring domains:
DSPc: domain 1 of 1, from 177 to 209: score 17.5, E = 0.0013
*->deavdFIdkarqkggkVLVHCqAGiSRSAtlii<-*
+++ + ++kar + g++ VHC AGi R++++++
K07F5.8 177 NAILELLEKARVSKGPIAVHCSAGIGRTGSVVM 209
Y_phosphatase: domain 1 of 1, from 18 to 256: score 332.5, E = 4.8e-96
*->NkeKNRykdilpyDhtRVkLk..egsDYINAnyidgpqsrtlvvykk
+ KNRykd+ + D++RVkL + +++ YI+Any+ +p ++
K07F5.8 18 EHGKNRYKDVGCLDNNRVKLGgaWPHEYIHANYVSTP--------TN 56
pkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqY
pk++I+TQ+Pl++T++DFW M+ + +v++I ML++ Ekg +K C++Y
K07F5.8 57 PKRFICTQAPLEKTCADFWFMCLQDRVETIFMLCNYKEKGA--KK-CHEY 103
WPee.ggeeggsltyGditVtlvseekk.....ddddytvRtleltn.gd
P+e++ ++ s + ++ +Vt + e +k + +d++ v++ +lt +g+
K07F5.8 104 LPTEdN-KDTMSFKEKGQKVTVKFESSKaikfrDNSAAKVTKTVLTVeGA 152
eskneakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvrksq
+ + +++V hyh+ +WPD+gvP +++l++l+k r s+
K07F5.8 153 G-----------CDKLKVNHYHWIDWPDRGVPTA-DNAILELLEKARVSK 190
sqenesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqqleae
+ Pi VHCSAGiGRTG ++ ++++++ql a+
K07F5.8 191 G--------------------PIAVHCSAGIGRTGSVVMLEYVMDQLLAG 220
gvvidifdivkelRsqRpgmVQteeQYiFiydaile<-*
+ + d +i++++R+qR+++VQt+ QY+F+++++++
K07F5.8 221 QIIEDTDKIIQKIREQRNNSVQTDHQYLFVHQVMMN 256