Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K07C11.4
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Query:  K07C11.4  CE07347   esterase status:Partially_confirmed TR:Q21266 protein_id:AAA96175.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
COesterase Carboxylesterase                             436.8   1.9e-127   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
COesterase   1/1       1   542 [.     1   592 []   436.8 1.9e-127

Alignments of top-scoring domains:
COesterase: domain 1 of 1, from 1 to 542: score 436.8, E = 1.9e-127
                   *->mglllllllllllllavvataptspedpvVeTsyvgGkvrGlrvkvd
                      m+  +lll  +l+ +a + + p       V T+y  G++ G+  k+
    K07C11.4     1    MSYIYLLLGYFLVSPAFCVSKP------KVTTPY--GPIVGFEHKST 39

                   ggnkpvyaFlGIPYAkPPvGeLRFkkPqPipepWtgv.ldATkygpaCpQ
                    ++ ++++FlGI+Y  PP    RF+kP+P +e+W  ++ dAT+++++C++
    K07C11.4    40 VTGSKYHVFLGIRYGNPPDHIYRFQKPEP-VEKWPHInHDATHFRASCIP 88

                   .ndlgfpgfpLAlevmgsemwnkntg.vsmSEDCLYLNVytPklasenkk
                   + + +                 +++++v++SEDCL+LN+ tP +a+e+ k
    K07C11.4    89 sLR-S-----------------ELEEqVNYSEDCLFLNIVTPPDAKEK-K 119

                   lPVmVwIHGGGFqsGsassfslddydgpdlaaekdVVVVtiNYRLGalGF
                   lPV+V+IHGGGFq+G+ s  +  +   +d +++kd+++V+i+YRLG+lGF
    K07C11.4   120 LPVLVFIHGGGFQFGDTS--MIGYQKAADNFVSKDIIFVSIQYRLGPLGF 167

                   LstgdselpvppGNaGLlDQvlALrWVqeNIaaFGGDPdnVTlFGeSAGA
                   ++tgdse+p   GN+GL+DQ+lAL++ +e    FGGDPd++Tl+G+SAGA
    K07C11.4   168 FTTGDSEIP---GNMGLWDQTLALQFLHEVLPDFGGDPDRITLAGHSAGA 214

                   aSVsllllSppqsrgLFhrAIlqSGsalspwaits.pearnrakrlAkll
                   aSVs+ll S p+s  LF +AI  SGs +s    + ++  ++ +++lAk++
    K07C11.4   215 ASVSALLYS-PHSDHLFSQAIQLSGSIFSESNLDRnV--VDDSRKLAKAA 261

                   GCpgedstelleCLRkksaeelldaqeklllldevgffpffaFgPvvdGd
                   GCp+eds el +C   ++ +ellda e  +  +  + +    F P +d d
    K07C11.4   262 GCPQEDSKELRDCIEIRTVDELLDAME--SIGELLPGPRTKKFHPYFDKD 309

                   tpdaflpkdPeellkegnfnkvPlliGvtsdEGllflayll.dp.esadl
                       f+p d e++ +   ++k+ ++ G +s E +l ++y  +  ++
    K07C11.4   310 ----FFPYDIEKMSRK--APKKRTMQGLVSLESGLSVLYPVkLAkL---- 349

                   lslldned............lflellpellpgaselltpklreeiadalk
                      +  e  ++ ++++  + +  ++++e ++g  ++        ++  +
    K07C11.4   350 -LGVPKESwstyskdnlvdfIRSQVAVEQEFGTASAR-------FSGLVE 391

                   eeYtdd.dd.nseesrealvdllsDylFvcpilrlaaarlakggapvYlY
                   e+Y+ ++ ++ns  +++a+++llsD+++++p+l  + ++l++g ++ YlY
    K07C11.4   392 EFYLSGpMTgNSSFYLNAFANLLSDLQYNIPTLHEVELKLQHGWDT-YLY 440

                   rFdyrssfsfnqylinllwppwmgvsHgdelsYvFGnpls.klyteeeek
                     dy+s++       +++  p +g+ H+ el Y+F+ + +++ + ++ +k
    K07C11.4   441 IIDYDSETT------KDPTHPIKGPFHASELRYLFNFNGMdTIPFNDKDK 484

                   lssrrmmrywtnFAktGnPNngessglpkWppytseeqkYyllntlltis
                    + + +++  +nF++tG P    s++   Wp++++ +q++ +l  + + s
    K07C11.4   485 KFENYFVNAIVNFINTGTP----STKALLWPAVSK-SQPFANLLLNDKPS 529

                   tk.lreedprkvkcafw<-*
                    ++++ ++     ++ w
    K07C11.4   530 VQtSFRQE----AYELW    542



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