Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K07A12.1
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Query: K07A12.1 CE18019 status:Partially_confirmed TR:P90919 protein_id:CAB03183.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF654 Protein of unknown function, DUF654 725.0 3.4e-214 1
Cgr1 Cgr1 family 10.4 0.042 1
DHHA2 DHHA2 domain 4.7 4.2 1
CBM_15 Carbohydrate binding domain (family 15) 2.5 6.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DHHA2 1/1 40 70 .. 1 32 [. 4.7 4.2
Cgr1 1/1 419 429 .. 111 121 .] 10.4 0.042
DUF654 1/1 124 514 .. 1 509 [] 725.0 3.4e-214
CBM_15 1/1 525 533 .. 1 10 [. 2.5 6.3
Alignments of top-scoring domains:
DHHA2: domain 1 of 1, from 40 to 70: score 4.7, E = 4.2
*->fdeLlkaKsdvsgDlsveelLrrDyKqFefgg<-*
++e +ka +d s s+eel ++D+K F++++
K07A12.1 40 AKEAKKAVNDGST-PSLEELMKIDMKLFDMSA 70
Cgr1: domain 1 of 1, from 419 to 429: score 10.4, E = 0.042
*->REKRNKlLkeR<-*
REKRNK+ + R
K07A12.1 419 REKRNKMYHGR 429
DUF654: domain 1 of 1, from 124 to 514: score 725.0, E = 3.4e-214
*->teskdwesfFafthSnaYqPLNSDLSKKqaQrmFlaavermdpVqnn
t++++++s+F+++h+naY+ q++rmF++a++rm++ ++
K07A12.1 124 TKKEGCISWFTLRHNNAYE---------QRERMFWMAEKRMNV--GV 159
vieLlSrkrPYHidsLLQvaeifkfqGDfelAaeLleRALYvldralhpn
v+e++ +++PYH++s+L++a+++++++Df+++a+L+eR+++++d++++++
K07A12.1 160 VQEIF-SDTPYHLNSILMMAHMNRMNEDFNTGADLIERGIWYVDQYAAAT 208
FslfsgncRqLdYrrpeNRlFYlvLfRhmqsLakRGCwRTAfEvcKlLLS
F++f++++R +dY+++eNR+FYl+L+Rhm+++a+++Cw+TA++++K++++
K07A12.1 209 FEPFHWKHR-MDYLDYENRAFYLLLHRHMLNAAHKRCWETAWNTAKMIFK 257
LdPdeDPlgmllliDyyALRakeYaWLiefseeaenVRAARRqPRRGAAA
LdP++DPl++++liD++AL+ak+Y+W+i+++e+a++
K07A12.1 258 LDPVKDPLAIISLIDIFALKAKQYQWIINTFEAAKK-------------- 293
ESEEADVKEALAAAGLTLRDAALanklsqlPNfaYSlALArfflekeeed
++kl++lPN++YS+ALArff++k++ed
K07A12.1 294 -----------------------FKKLHLLPNWPYSVALARFFTAKTDED 320
qeSeevsrdasrqsKVLRGLTAAqRASLAATPsArnlLlaAlkrfPgvLs
+e +A+n+L++A+++fP+v++
K07A12.1 321 RE------------------------------IAENDLCTAIRHFPSVVV 340
eLldelsGVDVVCGTEGATLSisddasVlqlkflqAGtsdvsisqapaln
+L+d+l+ i++d++V+++k+l ts+v+++++++l+
K07A12.1 341 QLMDILQ--------------IHPDSAVMNCKML---TSFVADNERDSLK 373
lLvklYvkRaellWklpevlsfLesavrkvlqsletgepevdsgDGseee
lLvk+Y+k+++++Wk+pe+l+fLe+a+rkv++s++t+e+e e+e
K07A12.1 374 LLVKVYAKHTDEVWKMPEALLFLEGATRKVATSTDTKEKE-------ECE 416
eweekRsilysgtsprNilRhviLseisskvpaalppdilqneVmefDpL
ew+ekR+++y+g+sp++++++++L+ei+++ +++Dp+
K07A12.1 417 EWREKRNKMYHGRSPNVDRFGQLLDEIPGQ--------------SLSDPV 452
PPdntlegysresrelseriksdlnekslfvqrveslldenlltqgeqep
PP+n+++gys+e++++++r+++d++++++f++++++++d++l++q+++++
K07A12.1 453 PPQNGRCGYSKEGGVNIARQMMDDTFLGGFINSLLPHFDGELSFQEQLNR 502
lgqalheveeea<-*
+g++++++++++
K07A12.1 503 YGGEFIRFLTNR 514
CBM_15: domain 1 of 1, from 525 to 533: score 2.5, E = 6.3
*->lelDMasGWR<-*
lD a+GWR
K07A12.1 525 -ALDIANGWR 533