Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K07A1.6
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Query: K07A1.6 CE18856 status:Confirmed TR:P90911 protein_id:CAB03176.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TIL Trypsin Inhibitor like cysteine rich domain 68.0 5.1e-20 1
TNFR_c6 TNFR/NGFR cysteine-rich region 6.8 1.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TIL 1/1 38 97 .. 1 67 [] 68.0 5.1e-20
TNFR_c6 1/1 77 99 .. 1 24 [. 6.8 1.5
Alignments of top-scoring domains:
TIL: domain 1 of 1, from 38 to 97: score 68.0, E = 5.1e-20
*->CpaneqyteCgpsCepsCsnpdgplettppCegtSpkvPstCkeg.C
Cp e++++Cg+ Ce sC++p++p + +C+ ++C++ +C
K07A1.6 38 CPRYETWRKCGNGCEKSCTHPRQP--PFSQCK-------LPCIPYsC 75
vCqpGyVrnndgd.kCVprseC<-*
C+pG++r+n+g+++CV+ + C
K07A1.6 76 RCNPGFYRDNQGTgRCVRLRRC 97
TNFR_c6: domain 1 of 1, from 77 to 99: score 6.8, E = 1.5
*->CeegvtYtd.enhleqClsCsrCep<-*
C +g +Y d++++ ++C++ +rC +
K07A1.6 77 CNPG-FYRDnQGT-GRCVRLRRCKK 99