Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K07A1.2
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Query:  K07A1.2  CE18855   deoxyuridine 5'-triphosphate nucleotidohydrolase status:Confirmed TR:O01934 protein_id:CAB03175.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
dUTPase  dUTPase                                        530.6   1.1e-155   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
dUTPase    1/3      38   167 ..     1   138 []   168.2  1.4e-46
dUTPase    2/3     194   323 ..     1   138 []   183.5  3.3e-51
dUTPase    3/3     357   486 ..     1   138 []   180.1  3.6e-50

Alignments of top-scoring domains:
dUTPase: domain 1 of 3, from 38 to 167: score 168.2, E = 1.4e-46
                   *->regdiptrkrpgsAGyDLcapydftlppepgetqlvptdisiplPpP
                        ++ pt+++  sAG DL++++d+++p+  +++ +v+t++ i lP+
     K07A1.2    38    GDAQKPTYGSISSAGADLYSAEDVVVPA--NGKLCVSTGLQIELPI- 81

                   gtvGlIlGRSSlaakGlivlpnAGvIDsdyrGeeikvvlyNsgkkpftik
                   g++G++++RS+laak++i+++ AGvIDsdyrG e+kv l+N++   f++k
     K07A1.2    82 GYYGRVAPRSGLAAKHFIDVG-AGVIDSDYRG-EVKVLLFNFNTTAFEVK 129

                   kGdRIAQLillplvhkapelepveellerterGdgGfgssg<-*
                   +GdRIA Li++++ +     e+v+ l   t rG gGfgs+g
     K07A1.2   130 TGDRIAKLICEQIGN--GTYEEVKSL-PSTNRGAGGFGSTG    167

dUTPase: domain 2 of 3, from 194 to 323: score 183.5, E = 3.3e-51
                   *->regdiptrkrpgsAGyDLcapydftlppepgetqlvptdisiplPpP
                      ++++ pt++++++AG DL++++d+t+p+  +++ +v+t+i + lP
     K07A1.2   194    ENAQTPTYGSEEAAGADLYSAEDITVPA--HGKCCVSTGIQMELPF- 237

                   gtvGlIlGRSSlaakGlivlpnAGvIDsdyrGeeikvvlyNsgkkpftik
                   g++G++++RS+laak++i+++ AGvIDsdyrG e+kv l+N+++  f++k
     K07A1.2   238 GYYGRVAPRSGLAAKHFIDVG-AGVIDSDYRG-EVKVLLFNFTDNAFEVK 285

                   kGdRIAQLillplvhkapelepveellerterGdgGfgssg<-*
                   kGdRIAQLi++++ h     e  +el e+t+rG gGfgs+g
     K07A1.2   286 KGDRIAQLICEKIGH--CVYEAASEL-ENTDRGAGGFGSTG    323

dUTPase: domain 3 of 3, from 357 to 486: score 180.1, E = 3.6e-50
                   *->regdiptrkrpgsAGyDLcapydftlppepgetqlvptdisiplPpP
                      +++++pt++++++AG DL++++d+t+p+  +++ +v+t+i ++lP+
     K07A1.2   357    DNAQMPTYGSAEAAGADLYSAEDVTVPA--RGKLCVSTGIQMALPI- 400

                   gtvGlIlGRSSlaakGlivlpnAGvIDsdyrGeeikvvlyNsgkkpftik
                   g++G++++RS+laak++i+++ AGvIDsdyrG e+kv l+N+g+ +f++k
     K07A1.2   401 GYYGRVAPRSGLAAKHFIDVG-AGVIDSDYRG-EVKVLLFNFGENDFEVK 448

                   kGdRIAQLillplvhkapelepveellerterGdgGfgssg<-*
                   kGdRIAQL+++++         ve l e terG gGfgs+g
     K07A1.2   449 KGDRIAQLVCEQIAL--CTYSKVESL-EVTERGAGGFGSTG    486



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