Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K07A1.2
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Query: K07A1.2 CE18855 deoxyuridine 5'-triphosphate nucleotidohydrolase status:Confirmed TR:O01934 protein_id:CAB03175.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
dUTPase dUTPase 530.6 1.1e-155 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
dUTPase 1/3 38 167 .. 1 138 [] 168.2 1.4e-46
dUTPase 2/3 194 323 .. 1 138 [] 183.5 3.3e-51
dUTPase 3/3 357 486 .. 1 138 [] 180.1 3.6e-50
Alignments of top-scoring domains:
dUTPase: domain 1 of 3, from 38 to 167: score 168.2, E = 1.4e-46
*->regdiptrkrpgsAGyDLcapydftlppepgetqlvptdisiplPpP
++ pt+++ sAG DL++++d+++p+ +++ +v+t++ i lP+
K07A1.2 38 GDAQKPTYGSISSAGADLYSAEDVVVPA--NGKLCVSTGLQIELPI- 81
gtvGlIlGRSSlaakGlivlpnAGvIDsdyrGeeikvvlyNsgkkpftik
g++G++++RS+laak++i+++ AGvIDsdyrG e+kv l+N++ f++k
K07A1.2 82 GYYGRVAPRSGLAAKHFIDVG-AGVIDSDYRG-EVKVLLFNFNTTAFEVK 129
kGdRIAQLillplvhkapelepveellerterGdgGfgssg<-*
+GdRIA Li++++ + e+v+ l t rG gGfgs+g
K07A1.2 130 TGDRIAKLICEQIGN--GTYEEVKSL-PSTNRGAGGFGSTG 167
dUTPase: domain 2 of 3, from 194 to 323: score 183.5, E = 3.3e-51
*->regdiptrkrpgsAGyDLcapydftlppepgetqlvptdisiplPpP
++++ pt++++++AG DL++++d+t+p+ +++ +v+t+i + lP
K07A1.2 194 ENAQTPTYGSEEAAGADLYSAEDITVPA--HGKCCVSTGIQMELPF- 237
gtvGlIlGRSSlaakGlivlpnAGvIDsdyrGeeikvvlyNsgkkpftik
g++G++++RS+laak++i+++ AGvIDsdyrG e+kv l+N+++ f++k
K07A1.2 238 GYYGRVAPRSGLAAKHFIDVG-AGVIDSDYRG-EVKVLLFNFTDNAFEVK 285
kGdRIAQLillplvhkapelepveellerterGdgGfgssg<-*
kGdRIAQLi++++ h e +el e+t+rG gGfgs+g
K07A1.2 286 KGDRIAQLICEKIGH--CVYEAASEL-ENTDRGAGGFGSTG 323
dUTPase: domain 3 of 3, from 357 to 486: score 180.1, E = 3.6e-50
*->regdiptrkrpgsAGyDLcapydftlppepgetqlvptdisiplPpP
+++++pt++++++AG DL++++d+t+p+ +++ +v+t+i ++lP+
K07A1.2 357 DNAQMPTYGSAEAAGADLYSAEDVTVPA--RGKLCVSTGIQMALPI- 400
gtvGlIlGRSSlaakGlivlpnAGvIDsdyrGeeikvvlyNsgkkpftik
g++G++++RS+laak++i+++ AGvIDsdyrG e+kv l+N+g+ +f++k
K07A1.2 401 GYYGRVAPRSGLAAKHFIDVG-AGVIDSDYRG-EVKVLLFNFGENDFEVK 448
kGdRIAQLillplvhkapelepveellerterGdgGfgssg<-*
kGdRIAQL+++++ ve l e terG gGfgs+g
K07A1.2 449 KGDRIAQLVCEQIAL--CTYSKVESL-EVTERGAGGFGSTG 486