Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K06A5.3
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Query: K06A5.3 CE11772 status:Partially_confirmed TR:O44550 protein_id:AAK21432.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MSP_domain MSP (Major sperm protein) domain 94.0 2.7e-26 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MSP_domain 1/1 6 124 .. 1 138 [] 94.0 2.7e-26
Alignments of top-scoring domains:
MSP_domain: domain 1 of 1, from 6 to 124: score 94.0, E = 2.7e-26
*->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
e + +P++ + + +++pfd++ ++ l+l+N+s + i FKvK+Tnn
K06A5.3 6 EFPGFPNDFHAFEVSPIPFDIN--SKELSLKNHSNRAILFKVKCTNN 50
klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
k+ r+ +++il+Pg+ + ++ + + + d + v+
K06A5.3 51 KRIRIEECSDILKPGNETTATIK--------KLVDTVD-----GDSLYVI 87
yleapsedadrqqkraareafkaaaaag.vlvgerkipvvfe<-*
y+++++e+++ +++a++++++a +++v +++i v ++
K06A5.3 88 YTLVGKEWHNE-----RMSAWRCWERAKkQAVPTQCISVPIK 124