hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K05F1.6
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Query:  K05F1.6  CE31815    status:Partially_confirmed TR:Q21240 protein_id:AAA68713.3

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
sugar_tr Sugar (and other) transporter                   34.4    3.5e-09   1
DUF44    Domain of unknown function DUF44                 7.0          1   1
NADHdh   NADH dehydrogenase                               5.2        1.9   1
DUF661   Uncharacterised BCR (COG3801)                    4.6          4   1
DUF549   Family of unknown function (DUF549)              1.9        9.5   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF549     1/1       1    25 [.     1    25 [.     1.9      9.5
DUF661     1/1     222   245 ..   120   143 .]     4.6        4
DUF44      1/1     275   295 ..    61    81 .]     7.0        1
NADHdh     1/1     537   562 ..   306   331 .]     5.2      1.9
sugar_tr   1/1     274   669 ..    60   488 .]    34.4  3.5e-09

Alignments of top-scoring domains:
DUF549: domain 1 of 1, from 1 to 25: score 1.9, E = 9.5
                   *->MAkSkFeYVkqfEklDriLPscyiV<-*
                      M   +   +k+f   D++LP+ ++V
     K05F1.6     1    MPDISYNLHKSFAASDTLLPHMRVV    25

DUF661: domain 1 of 1, from 222 to 245: score 4.6, E = 4
                   *->LeeLleraWkaqAPKkllkAfaaa<-*
                      Le    +aWk +APKk  +A+
     K05F1.6   222    LETAMSEAWKDVAPKKKCQAYHFE    245

DUF44: domain 1 of 1, from 275 to 295: score 7.0, E = 1
                   *->ppGqiVfcVmaritSdepGkt<-*
                      ++G ++ cV++ i+Sd+ G++
     K05F1.6   275    SIGYLLGCVLGGIASDKIGRK    295

NADHdh: domain 1 of 1, from 537 to 562: score 5.2, E = 1.9
                   *->LMrLgWKnfLPlsLalllltasllit<-*
                      +M Lg K+ L l+L+   l+++++ +
     K05F1.6   537    MMQLGRKKALMLTLITSGLFIIVAML    562

sugar_tr: domain 1 of 1, from 274 to 669: score 34.4, E = 3.5e-09
                   *->fflGrliGslfaGklgdrfGRkksllialvlfviGallsgaapgytT
                      +++G l+G++++G  +d++GRk++++ +++l++  ++   + +
     K05F1.6   274    YSIGYLLGCVLGGIASDKIGRKPTIIGFGILSSMLGVFLPFND---- 316

                   iGlwafyllivGRvlvGlgvGgasvlvPmYisEiAPkalRGalgslyqla
                        + ++++ R+l+ ++  +a  ++ +++ Ei  ++ R++ gs+ q
     K05F1.6   317 ----YYPMFLLIRLLSAICNEAADLAAYTLCMEITGTKYRAMVGSMLQAP 362

                   itiGilvAaiiglglnktnndsalnswgWRiplglqlvpalllligllfl
                   +++G  + a+i++ ++                  +++ +  + +i+++++
     K05F1.6   363 WALGYALLALIAYLTKSWKT-----------IQVIAAGLHFMSIIFICSI 401

                   PESPRwLvekgkleeArevLak..lrgv...............edvdqei
                   PESPRwL+ + +++eA+ev++k  +++  + +  ++++ ++ ++d
     K05F1.6   402 PESPRWLMVQNRVSEAEEVIRKacREPPfpfnmcttskcgnlpSDLELVS 451

                   qeikaeleatvseekagkaswgelfrgrtrpkvrqrllmgvmlqafqQlt
                     ++   +++      gk+ +++lf+++    +r+r++ ++ + +++
     K05F1.6   452 HRERKLNKKN-----GGKIGFLDLFTMKE---LRYRTISVCIVFMAT--- 490

                   GiNaifYYsptifks.......vGvsdsvasllvtiivgvvNf..vfTfv
                      a+ YY+ ++  s+++ +++  ++      l ++i g++ ++++f +v
     K05F1.6   491 ---ALVYYGLVMALSdqsapgrTLFTGYFH--LNNGIAGAIEIptLFACV 535

                   aLiflvDrfGRRpllllGaagmaicflilgasigvallllnkpkdpsska
                   +    +  +GR++ l+l +++  ++ ++       +l  ++++
     K05F1.6   536 W----MMQLGRKKALMLTLITSGLFIIVA------MLSMVSGH------- 568

                   agivaivfillfiafFalgwGpipwvilsElFPtkvRskalalataanwl
                     ++a++f+++   +   g+  i ++ +sEl+Pt vR +a +++ ++ ++
     K05F1.6   569 -YMLALAFMYFGKIAVQ-GAFNILYIFTSELYPTVVRNTAVGVTSMVARF 616

                   anfiigflfpyitgaiglalggyvflvfagllvlfilfvfffvPETkGrt
                   ++ + +  +  ++++i+  l++  +++fa++ +++     f +PET  ++
     K05F1.6   617 GSGLSS--YIALLSNIS--LPIVPMIIFAVFSLFAG-MLVFVLPETSEKP 661

                   LEeieelf<-*
                   L e   +
     K05F1.6   662 LPETLDDA    669

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