Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K05C4.6
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Query: K05C4.6 CE19974 locus:hmp-2 Armadillo\/beta-catenin-like repeats (4 domains) status:Confirmed TR:O44326 protein_id:CAB04572.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Armadillo_seg Armadillo/beta-catenin-like repeat 88.0 2.9e-23 7
HEAT_PBS PBS lyase HEAT-like repeat 7.1 5.7 1
DUF603 Protein of unknown function, DUF603 3.6 3 1
DUF685 Protein of unknown function (DUF685) 1.5 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF685 1/1 69 86 .. 326 344 .] 1.5 8.6
Armadillo_seg 1/7 124 151 .. 14 40 .] 9.7 0.59
HEAT_PBS 1/1 138 159 .. 1 22 [. 7.1 5.7
Armadillo_seg 2/7 152 192 .. 1 40 [] 17.0 0.0048
DUF603 1/1 186 204 .. 65 83 .. 3.6 3
Armadillo_seg 3/7 194 234 .. 1 40 [] 6.4 5.1
Armadillo_seg 4/7 279 320 .. 1 40 [] 24.4 3.9e-05
Armadillo_seg 5/7 335 359 .. 17 40 .] 8.0 1.7
Armadillo_seg 6/7 361 403 .. 1 40 [] 30.0 9.7e-07
Armadillo_seg 7/7 408 448 .. 1 40 [] 4.6 16
Alignments of top-scoring domains:
DUF685: domain 1 of 1, from 69 to 86: score 1.5, E = 8.6
*->iqkrgkLstGeevPiLnKl<-*
+ ++ +s G ++P+L Kl
K05C4.6 69 YEGSNDMS-GLSLPDLVKL 86
Armadillo_seg: domain 1 of 7, from 124 to 151: score 9.7, E = 0.59
*->lppLvqLLs.pdeevqeeAawALsNLaa<-*
+++L+ ++ +++v+++A +ALs+++
K05C4.6 124 VEALMAASKsSNVNVRRNAIGALSHMSE 151
HEAT_PBS: domain 1 of 1, from 138 to 159: score 7.1, E = 5.7
*->vRraAaraLgalgdpeAipaLl<-*
vRr+A+ aL + ++ p+L+
K05C4.6 138 VRRNAIGALSHMSEQRGGPLLI 159
Armadillo_seg: domain 2 of 7, from 152 to 192: score 17.0, E = 0.0048
*->npenkqavveaGalppLvqLLs.pdeevqeeAawALsNLaa<-*
++ ++G+l ++++L++ e+v+ +A+++L+NL
K05C4.6 152 QRGGPLLIFRSGGLAEIIRMLYdSLESVVHYAVTTLRNLLM 192
DUF603: domain 1 of 1, from 186 to 204: score 3.6, E = 3
*->TlenlLiqafrSevnARdl<-*
Tl nlL + + S ++AR l
K05C4.6 186 TLRNLLMHVSDSRAQARAL 204
Armadillo_seg: domain 3 of 7, from 194 to 234: score 6.4, E = 5.1
*->npenkqavveaGalppLvqLLs.pdeevqeeAawALsNLaa<-*
++ + + + ++a+++L L++++++++ ++a L L
K05C4.6 194 VSDSRAQARALNAVEALTPHLHkTNPKLLAQVADGLYFLLI 234
Armadillo_seg: domain 4 of 7, from 279 to 320: score 24.4, E = 3.9e-05
*->npenkqavveaGalppL.vqLLs.pdeevqeeAawALsNLaa<-*
+p nk a++ +G+lp+L v+L++ +de+ q++ + A++NL++
K05C4.6 279 CPSNKPALISLGCLPALyVELCTaKDERSQTAILVAMRNLSD 320
Armadillo_seg: domain 5 of 7, from 335 to 359: score 8.0, E = 1.7
*->LvqLLs.pdeevqeeAawALsNLaa<-*
L++ ++ + ++ A+++LsNL+
K05C4.6 335 LLEIIRvANDGMTACACGTLSNLTC 359
Armadillo_seg: domain 6 of 7, from 361 to 403: score 30.0, E = 9.7e-07
*->npenkqavveaGalppLvqLLs...pdeevqeeAawALsNLaa<-*
n +nkq+v+ +G++ +Lv +++ ++ eev e+A++AL++ +a
K05C4.6 361 NTRNKQTVCSHGGIDALVTAIRrlpEVEEVTEPALCALRHCTA 403
Armadillo_seg: domain 7 of 7, from 408 to 448: score 4.6, E = 16
*->npenkqavveaGalppLvqLLs.pdeevqeeAawALsNLaa<-*
+e +++ + a p++++ L++ + v ++A+++++N a
K05C4.6 408 AEEAQSELRFCQAFPVILDQLEtLRTPVIKAALGVIRNSAL 448
[output cut off at A = 10 top alignments]