Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K04G7.3
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Query: K04G7.3 CE25042 status:Partially_confirmed TR:O18158 protein_id:AAA62535.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TPR TPR Domain 350.6 1.8e-101 13
Peptidase_C9 Peptidase family C9 7.6 0.14 1
Adeno_IVa2 Adenovirus IVa2 protein 5.5 1.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TPR 1/13 135 158 .. 11 34 .] 7.5 2.5
Adeno_IVa2 1/1 193 225 .. 1 35 [. 5.5 1.2
TPR 2/13 193 226 .. 1 34 [] 37.3 7.8e-09
TPR 3/13 227 260 .. 1 34 [] 30.5 6.9e-07
TPR 4/13 261 294 .. 1 34 [] 26.8 7.8e-06
TPR 5/13 295 328 .. 1 34 [] 38.1 4.7e-09
TPR 6/13 329 362 .. 1 34 [] 20.8 0.00041
TPR 7/13 363 396 .. 1 34 [] 35.6 2.4e-08
TPR 8/13 397 430 .. 1 34 [] 34.4 5.1e-08
TPR 9/13 431 464 .. 1 34 [] 30.7 6.1e-07
TPR 10/13 465 498 .. 1 34 [] 37.4 7.4e-09
TPR 11/13 499 532 .. 1 34 [] 43.4 1.4e-10
TPR 12/13 533 566 .. 1 34 [] 36.1 1.7e-08
TPR 13/13 567 578 .. 1 12 [. 5.0 13
Peptidase_C9 1/1 964 975 .. 1 12 [. 7.6 0.14
Alignments of top-scoring domains:
TPR: domain 1 of 13, from 135 to 158: score 7.5, E = 2.5
*->ylklgkydeAieayekALeldPnn<-*
+++ g+y eA+++++ + + dPnn
K04G7.3 135 QFQSGNYVEAEKYCNLVFQSDPNN 158
Adeno_IVa2: domain 1 of 1, from 193 to 225: score 5.5, E = 1.2
*->ldgeeveevgelydrvqlwqqtldslPlaegLkPl<-*
+ +++ +g++y+ +++q++l++ la LkP+
K04G7.3 193 AE--AYSNLGNYYKEKGQLQDALENYKLAVKLKPE 225
TPR: domain 2 of 13, from 193 to 226: score 37.3, E = 7.8e-09
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
aeay nlGn y ++g++++A+e y+ A++l P++
K04G7.3 193 AEAYSNLGNYYKEKGQLQDALENYKLAVKLKPEF 226
TPR: domain 3 of 13, from 227 to 260: score 30.5, E = 6.9e-07
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ay nl++a+ + g++++A+ ay AL+++P+
K04G7.3 227 IDAYINLAAALVSGGDLEQAVTAYFNALQINPDL 260
TPR: domain 4 of 13, from 261 to 294: score 26.8, E = 7.8e-06
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ + lGn++ ++g+++eA +y kA+e +P++
K04G7.3 261 YCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQF 294
TPR: domain 5 of 13, from 295 to 328: score 38.1, E = 4.7e-09
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a a+ nlG ++ ++g+ Ai ++ekA+ ldPn+
K04G7.3 295 AVAWSNLGCVFNSQGEIWLAIHHFEKAVTLDPNF 328
TPR: domain 6 of 13, from 329 to 362: score 20.8, E = 0.00041
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ay nlGn++ + +d A+ ay +AL l n+
K04G7.3 329 LDAYINLGNVLKEARIFDRAVSAYLRALNLSGNH 362
TPR: domain 7 of 13, from 363 to 396: score 35.6, E = 2.4e-08
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a ++ nl+ +y+++g d Ai+ y+kA++l+P++
K04G7.3 363 AVVHGNLACVYYEQGLIDLAIDTYKKAIDLQPHF 396
TPR: domain 8 of 13, from 397 to 430: score 34.4, E = 5.1e-08
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
++ay+nl+na+ ++g eA++ y kALel P++
K04G7.3 397 PDAYCNLANALKEKGSVVEAEQMYMKALELCPTH 430
TPR: domain 9 of 13, from 431 to 464: score 30.7, E = 6.1e-07
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a+ +nl+n+ +++gk ++A y kALe+ P++
K04G7.3 431 ADSQNNLANIKREQGKIEDATRLYLKALEIYPEF 464
[output cut off at A = 10 top alignments]