Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K04A8.1
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Query: K04A8.1 CE21019 status:Partially_confirmed TR:Q94259 protein_id:AAC48047.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF268 Caenorhabditis protein of unknown function, 469.7 2.4e-137 1
Flu_NS1 Influenza non-structural protein (NS1) 3.7 2.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Flu_NS1 1/1 111 127 .. 201 217 .] 3.7 2.8
DUF268 1/1 200 376 .] 1 188 [] 469.7 2.4e-137
Alignments of top-scoring domains:
Flu_NS1: domain 1 of 1, from 111 to 127: score 3.7, E = 2.8
*->FAWrssnEngrPpLppk<-*
FAW+ E+ +P ppk
K04A8.1 111 FAWQKISEQPQPKFPPK 127
DUF268: domain 1 of 1, from 200 to 376: score 469.7, E = 2.4e-137
*->dgmsGvViGSmqPwvEVsaLqhGnylkPnkAskiLTvEyneriLeIe
dg+sGvViGSmqPwvEVsaLq+G Ask+LTvEyn+ L+I+
K04A8.1 200 DGKSGVVIGSMQPWVEVSALQSG-------ASKVLTVEYNK--LTIQ 237
eefrdRedlSSilPtdFaknwkkYaesFDFAAsFssIEhsGLGrYGdPlD
eefrdR +SSilP+dF+knw+ Ya++FDFAAsFssIEhsGLGrYGdP D
K04A8.1 238 EEFRDR--MSSILPIDFVKNWRDYAGTFDFAASFSSIEHSGLGRYGDPVD 285
PiGDLREmlKIkCvLKkGGLLFLGlPlGtDAlqFnahRIYGsvRLAMmfa
P GDLREmlKIkCvLK+GGLLF+G+PlGtD++q+nahRIYGs+RLAMm++
K04A8.1 286 PLGDLREMLKIKCVLKPGGLLFIGFPLGTDSIQYNAHRIYGSIRLAMMMY 335
GFEWiaTFSgdseksidLtsqrldsknlFgliqyTLVLRKl<-*
GFEW++TFSgd e+++dLts rl+sk+ Fg iq+TLVLRKl
K04A8.1 336 GFEWLDTFSGDKEEANDLTSDRLHSKPIFGQIQNTLVLRKL 376