Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K04A8.5
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Query:  K04A8.5  CE11708   lipase status:Partially_confirmed TR:Q94252 protein_id:AAC48051.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
abhydro_lipase ab-hydrolase associated lipase region    107.9      2e-29   1
abhydrolase    alpha/beta hydrolase fold                 34.7    1.1e-09   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
abhydro_lipase   1/1      28   101 ..     1    71 []   107.9    2e-29
abhydrolase      1/1     115   402 ..     1   232 []    34.7  1.1e-09

Alignments of top-scoring domains:
abhydro_lipase: domain 1 of 1, from 28 to 101: score 107.9, E = 2e-29
                   *->idpeanmnvsqlIkkwGYpsEeHtVtTeDGYILtLhRIprgk..knk
                      +d e ++++++lIk wGY+ E++  tT+DG IL+LhRIp+g++ + +
     K04A8.5    28    VDLEFYLDTPELIKSWGYSVEIYNTTTKDGFILELHRIPYGRevPTS 74

                   td.lgkrPvVlLQHGLlasSsnWVvNl<-*
                   +d +++rPv++LQHG l+sS++WV N+
     K04A8.5    75 SDvNNSRPVIFLQHGFLCSSFDWVANS    101

abhydrolase: domain 1 of 1, from 115 to 402: score 34.7, E = 1.1e-09
                   *->frvillDlrGfGeSsp..............sdlaeyrfddlaedlea
                      f+v+l++ rG  +S+++ + +++++++  +  ++ ++  dl +++ +
     K04A8.5   115    FDVWLGNFRGNTYSRKhvslnpdkdpkfwdWSWDQISEYDLPAMIGK 161

                   lldalglekpvilvGhSmGGaialayaakyPel..rvkalvlvspp....
                    l+  g+e  +++ G+S+G+++++a +++ P+ ++++k+  +++p ++ +
     K04A8.5   162 ALEISGQES-LYYTGFSLGTLTMFAKLSTDPKFsrKIKKYFALAPIgsik 210

                   ....lpaglssdlfprq.gnleglllanfrnrlsrsveallgralkqffl
                   + ++++ +l++ + ++++++ +++ ++  ++ +s  +++  +++++ f +
     K04A8.5   211 hahgVFLFLGRHFGKDYeEYVKKHGSDELFG-SSLLFKKIVKYTCGLFDT 259

                   lgrplvsdflkqaedwlsslirqgeddggdgllga...............
                   l++  +sd+   + ++++  ++q   + ++++  a+++++   + ++  +
     K04A8.5   260 LEEF-CSDITLLFIGTANENWNQTRIPVYLAHTPAgsssnvmahldqmfs 308

                   .........avalgkllqwdls.alkd....ikvPtlviwgtdDplvpld
                    ++ ++ +    +   +++++ +++++ ++  +vP++++w +dD+l + +
     K04A8.5   309 yggvptfdmGEEKNLKAYGQKLpPQYNftgiADVPIYLFWSDDDWLSTKQ 358

                   asek.lsalipn...aevvviddagHlallekpeevaeli.kfl<-*
                   + e +l a ++++  +  + i+++ Hl ++++ ++  ++++
     K04A8.5   359 DLEEtLFAQLNSqvvQGSFRIENYNHLHFIWGTNAASQVYnVIT    402



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