hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K04A8.6
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Query:  K04A8.6  CE27388    status:Partially_confirmed TR:Q94251 protein_id:AAC48052.3

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
F-box           F-box domain                             48.9    2.5e-11   1
zf-UBR1         Putative zinc finger in N-recognin       36.6    5.6e-08   1
Rhabdo_glycop   Rhabdovirus spike glycoprotein            4.5        1.1   1
Nairo_nucleocap Nucleocapsid N protein                    0.8        5.9   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
F-box             1/1     160   207 ..     1    46 []    48.9  2.5e-11
Rhabdo_glycop     1/1     269   300 ..   457   489 ..     4.5      1.1
Nairo_nucleocap   1/1     526   533 ..     1     8 [.     0.8      5.9
zf-UBR1           1/1     859   913 ..    16    80 .]    36.6  5.6e-08

Alignments of top-scoring domains:
F-box: domain 1 of 1, from 160 to 207: score 48.9, E = 2.5e-11
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kl
                      +++ +LP+elll+++s+L+ k+ll++s+VS r++++++s+++w++ +
     K04A8.6   160    DHINRLPEELLLKVFSFLPDKSLLACSSVSYRFNQISNSHeVWKeLY 206

                   l<-*
                   +
     K04A8.6   207 C    207

Rhabdo_glycop: domain 1 of 1, from 269 to 300: score 4.5, E = 1.1
                   *->sikdaenteDdDDtEEvffdnhigvsknpvdlv<-*
                      +i++a++++ +D+  E ++++h+gv ++p+d +
     K04A8.6   269    QIEKAQSFLEEDEYREKLIFLHTGV-HEPIDTI    300

Nairo_nucleocap: domain 1 of 1, from 526 to 533: score 0.8, E = 5.9
                   *->MENkIkan<-*
                      MEN+I an
     K04A8.6   526    MENRIYAN    533

zf-UBR1: domain 1 of 1, from 859 to 913: score 36.6, E = 5.6e-08
                   *->nlYrCkTCaldpetcvlCedCFrsscHkgHdvlvslktsrgsEGgiC
                      n YrC TC+++   +++C++C r +cH gH+  v+l +  +   ++C
     K04A8.6   859    NFYRCTTCNTTE-RNAICTNCIR-TCHRGHS--VELVRFDR---FFC 898

                   DCGdkeAwnedlkCknhe<-*
                   DCG+    + + +C + +
     K04A8.6   899 DCGAG---TLERHCHLQN    913

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