Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K03H1.4
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Query:  K03H1.4  CE00475   Transthyretin-like family status:Partially_confirmed SW:P34500 protein_id:CAA82657.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF290   Transthyretin-like family                      233.4    3.2e-66   1
UL79     UL79 family                                      1.9         10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UL79       1/1      29    41 ..     1    13 [.     1.9       10
DUF290     1/1      23   148 .]     1   129 []   233.4  3.2e-66

Alignments of top-scoring domains:
UL79: domain 1 of 1, from 29 to 41: score 1.9, E = 10
                   *->mlGrYvregkpmS<-*
                      + Gr+v+egkp+S
     K03H1.4    29    IKGRLVCEGKPAS    41

DUF290: domain 1 of 1, from 23 to 148: score 233.4, E = 3.2e-66
                   *->rdQsvaVkGrLiCggkPaanvkVkLydkdtGpel.giidpDdLLdet
                      r+Qs+a+kGrL C gkPa++vkVkL++ d+ ++ +g++d Dd+++++
     K03H1.4    23    RTQSAAIKGRLVCEGKPASGVKVKLMESDN-SFGpGFLDSDDKMASG 68

                   kTdenGeFqLsGsttEittINPDPkLnIyHdCndggkepCqRklkitIPk
                   k+d+ GeF+LsGst+Eit+I  +P+L ++HdC+dg++ pCqR++++++Pk
     K03H1.4    69 KADSHGEFNLSGSTKEITGI--EPYLVVFHDCKDGIT-PCQRVFRVNVPK 115

                   eyitsGktpkktFDIGtlnLankfpgEtrdckn<-*
                   +y++sG+ +kkt+D+G+++La+k+pgEtr+c+n
     K03H1.4   116 SYTNSGSSAKKTYDAGVIELAGKYPGETRSCLN    148



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