hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/K02E10.8
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  K02E10.8  CE30157    status:Partially_confirmed TR:Q21139 protein_id:AAC47074.4

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
ig              Immunoglobulin domain                    83.8    1.5e-21   4
dTDP_sugar_isom dTDP-4-dehydrorhamnose 3,5-epimerase      3.7          6   1
UPF0041         Uncharacterised protein family (UPF00     3.6        9.6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
ig                1/4      37   106 ..     1    50 []    24.1    5e-05
ig                2/4     285   338 ..     1    50 []    15.2    0.015
ig                3/4     371   422 ..     1    50 []    17.6   0.0032
dTDP_sugar_isom   1/1     442   457 ..   166   181 .]     3.7        6
ig                4/4     455   521 ..     1    50 []    26.8  9.3e-06
UPF0041           1/1     629   641 ..    38    50 ..     3.6      9.6

Alignments of top-scoring domains:
ig: domain 1 of 4, from 37 to 106: score 24.1, E = 5e-05
                   *->GesvtLtCsvsgfgpp.p.vtWlrngk.le.................
                      Ge++ LtC+v      + +v+W +++ +l+++++++ +++++ +  +
    K02E10.8    37    GETAILTCRVE---HQqGpVQWMKDDFgLGtdrdkplpgnkryrmvg 80

                   ...tsslslti.svtpeDsgGtYtCvv<-*
                   +  ++ ++l+i++vt  D+   + C+
    K02E10.8    81 saaNGEYNLEIsNVTLFDD-DDFACQI    106

ig: domain 2 of 4, from 285 to 338: score 15.2, E = 0.015
                   *->GesvtLtCsvsgfgpp.p.vtWlrngk.letsslslti.svtpeDsg
                      ++s+ L C v+    ++++++W++++++l  ++ +lt+++++ eD+
    K02E10.8   285    NGSALLACNVNAKPLDnVkISWYKGNQkLRETGDTLTFeTLKMEDHN 331

                   GtYtCvv<-*
                      +C++
    K02E10.8   332 RDIFCEA    338

ig: domain 3 of 4, from 371 to 422: score 17.6, E = 0.0032
                   *->GesvtLtCsvsgfgpp.p.vtWlrngk.le.tsslslti.svtpeDs
                      G+ + + C     ++p p ++W+r+++++   ++ +lt+++v+
    K02E10.8   371    GDNAFFHCATL--ANPaPaIFWTRGDSdEIiGHGENLTLeNVRTWQQ 415

                   gGtYtCvv<-*
                    G+Y C++
    K02E10.8   416 -GNYNCTA    422

dTDP_sugar_isom: domain 1 of 1, from 442 to 457: score 3.7, E = 6
                   *->pvLSeKDanaplLaea<-*
                      p +S KD +  +L+ea
    K02E10.8   442    PTVSMKDEVSASLDEA    457

ig: domain 4 of 4, from 455 to 521: score 26.8, E = 9.3e-06
                   *->GesvtLtCsvsgfgpp.p.vtWlrngk.le...............ts
                       e   + C+ s + p++ +v+W+ ngk++  ++++ + ++ +++
    K02E10.8   455    DEATEIICEIS-GRPKtNnVRWTVNGKeINfnngritvhqypkpyGK 500

                   slslti.svtpeDsgGtYtCvv<-*
                    + l i+++++eD  G+Y C +
    K02E10.8   501 ESILKIkDLKEEDF-GVYNCSA    521

UPF0041: domain 1 of 1, from 629 to 641: score 3.6, E = 9.6
                   *->lKRppekiSgpqn<-*
                      +K++ ++iS+pqn
    K02E10.8   629    MKKNSDYISIPQN    641

[DB home][top]