Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H38K22.5c
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Query: H38K22.5c CE28041 Glycosyl transferases status:Confirmed TR:O61396 protein_id:CAC42318.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glycos_transf_2 Glycosyl transferase 102.5 8.2e-29 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glycos_transf_2 1/1 160 345 .. 1 149 [] 102.5 8.2e-29
Alignments of top-scoring domains:
Glycos_transf_2: domain 1 of 1, from 160 to 345: score 102.5, E = 8.2e-29
*->SiiiPtYNe.ekyleecleSllnQt.tyenfEiivVDDgS.tDgtve
S+ii+ +Ne +++l++++ S+++ ++ + Eii+VDD S++ ++
H38K22.5c 160 SVIIVYHNEaYSTLLRTVWSVIDRSpKELLKEIILVDDFSdREFLRY 206
ileeyak...dprirvirleenlGlaaArNaGlkhAtGdydyiaflDaDd
+ ++ + +i++ir++e+ Gl++Ar++G++ A+Gd +++flD+++
H38K22.5c 207 PTLDTTLkplPTDIKIIRSKERVGLIRARMMGAQEAQGD--VLTFLDSHC 254
ev.pdwlekllellekngadivig.rv.in.e.n.kgr............
e++++wle+ll +++ n++++ ++ ++ in+++++++++ + +++ + +
H38K22.5c 255 ECtKGWLEPLLTRIKLNRKAVPCPvIDiINdNtFqYQKgiemfrggfnwn 304
........lngk.l.r.l.l.v.fli.snalyrrealekll<-*
+ + +++ l+++ ++ ++++a++ +++ ++++
H38K22.5c 305 lqfrwygmPTAMaKqHlLdPtGpIESpTMAGGLFSINRNYF 345