Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H34C03.2
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Query: H34C03.2 CE19500 ubiquitin carboxy-terminal hydrolase status:Partially_confirmed TR:Q9TYY8 protein_id:AAC68977.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UCH Ubiquitin carboxyl-terminal hydrolase 398.0 2.5e-138 1
PHD PHD-finger 7.0 0.46 1
DUF100 Protein of unknown function DUF100 6.9 0.31 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF100 1/1 86 119 .. 336 369 .] 6.9 0.31
PHD 1/1 717 727 .. 41 51 .] 7.0 0.46
UCH 1/1 272 844 .. 1 456 [] 398.0 2.5e-138
Alignments of top-scoring domains:
DUF100: domain 1 of 1, from 86 to 119: score 6.9, E = 0.31
*->RhGpFePHRLPseemEYttlPkvLekLedRFedl<-*
R G F +e+++Yt +P++L k +RF+ +
H34C03.2 86 RNGSFFLKQRLAEQVDYTPVPEILFKRLERFYHI 119
PHD: domain 1 of 1, from 717 to 727: score 7.0, E = 0.46
*->gkWlCpeCtpk<-*
+ W+Cp+C+ +
H34C03.2 717 DSWYCPQCKKH 727
UCH: domain 1 of 1, from 272 to 844: score 398.0, E = 2.5e-138
*->egpvGLvNlGNTCYmNSvLQcLfhipelrdyllsnrhylprinnsnp
+g++GL NlGNTC+m S+ QcL++ p+lr+y+l n y+++in++np
H34C03.2 272 PGACGLSNLGNTCFMASAFQCLSNMPPLREYFLAN-TYQNDINEDNP 317
lgskgqllcaladlfkslqsnqyssppseaelslfeSnavsalnknskpe
lg +g l+ a l+k ++s++y
H34C03.2 318 LGTHGHLAMAVGELMKGMWSGDY--------------------------- 340
esisPtqflktlgkinpsFselegykliqQqDAqEfllfLLdgLhEDlNr
+si P++f++++g+++p F+ gy+ QqDA+E+ ++ LdgLhEDlNr
H34C03.2 341 ASINPRKFKSIIGQFAPRFN---GYS---QQDAHELMAYVLDGLHEDLNR 384
vakkpyneehepgldlalee.ee.adelkdseaseeawknkstrneslis
++kkpy e++ + +l+++e++ w+ + rn+s+i+
H34C03.2 385 IKKKPY------------IEdSDeDAKLPEAEYAAKSWEVYKMRNDSIIV 422
dlFqGqlesrikCaleCgkvsvtyepFldLslpi................
d +Gql+s+++C ++C+k+s++++pF +Lslp++++++ +++
H34C03.2 423 DTLHGQLKSTLIC-PVCEKISIKFDPFGYLSLPLppkeqivkqtvivmfl 471
..................................................
+++ + + + +++++ ++ ++ ++ +++++++ + +++ +++ +
H34C03.2 472 trkwakfslgitdtttveeaerlmldklqpeqqhhfvffhvpsqyhddit 521
..................................................
+++++ + ++++ + +++ + ++++ ++ + ++ + +
H34C03.2 522 mmrpgdrvrmpgrevyvaevehdlqvkgtrlfvaynriklvrsaslpmiy 571
..................................................
+ +++ + +++ +++ +++++ +++ + ++++++++++ +++++
H34C03.2 572 slptgypltrgflndhvfsttkhffinpkavaelgggnsndddsmsgsns 621
..................................................
+++++ + ++++++ + + ++++++ + +++++++ ++ + +
H34C03.2 622 aderepyklfvgppgstaslpipptddpipfpdenshdiysnflqivfqw 671
.................kpkeasdspksLeecLkaFtkeEiLKviegenk
++ + ++ ++++ +++ ++++++ L+e L+ Ft++E+L ++++
H34C03.2 672 kdlkifnqykgnelierEMTVSTRRKVLLQETLDWFTTKEQL---GEQDS 718
yyCdkcgkkqeasKklkisrLPpiLtihLkRFsydgetssnimKindrve
+yC++c+k+++a+K+l +++LP+iL++hLkRF+y + + K+ v
H34C03.2 719 WYCPQCKKHERATKQLALWKLPEILILHLKRFQYTKWSRE---KLTWEVV 765
fPleeLDlspylnqktnkeraaaeansleeeqqsvnadegnnqeeseest
P + LDl++ ++
H34C03.2 766 IPVRGLDLTDKVA------------------------------------- 778
ksqeegenpptkYeLvaVvvHsGsslsgGHYiayikkldnnkWykFDDsv
++ +Y+L+aV+ H+G slsgGHY+a ++++++kW+ F+Ds
H34C03.2 779 ----NPNHEKAIYDLIAVSRHYG-SLSGGHYTAIGYNDREQKWFDFNDS- 822
etVgdwkvvsvvseeevlkesgggtatseskrlkryrwAYiLFY<-*
+ ++ + + es + +YiL+Y
H34C03.2 823 -SA------NPTYPPAEPYESSD---------------PYILVY 844