Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/H28O16.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  H28O16.1  CE18826   ATP synthase alpha and beta subunits, ATP synthase Alpha chain, C terminal status:Confirmed TR:Q9XXK1 protein_id:CAA1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
ATP-synt_ab   ATP synthase alpha/beta family, nucleot   376.3     3e-109   1
ATP-synt_ab_C ATP synthase alpha/beta chain, C termin   146.4    5.7e-41   1
ATP-synt_ab_N ATP synthase alpha/beta family, beta-ba    67.3    2.7e-21   1
MOZ_SAS       MOZ/SAS family                              4.5        3.4   1
Bac_GDH       Bacterial NAD-glutamate dehydrogenase      -0.1          8   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
ATP-synt_ab_N   1/1      52   120 ..     1    69 []    67.3  2.7e-21
Bac_GDH         1/1     298   312 ..  1619  1633 .]    -0.1        8
MOZ_SAS         1/1     313   322 ..     1    10 [.     4.5      3.4
ATP-synt_ab     1/1     224   406 ..     1   187 []   376.3   3e-109
ATP-synt_ab_C   1/1     408   516 ..     1   147 []   146.4  5.7e-41

Alignments of top-scoring domains:
ATP-synt_ab_N: domain 1 of 1, from 52 to 120: score 67.3, E = 2.7e-21
                   *->ivqviGpVvdVefgigrlpgiynalevelvefgklvlgvvlnLgddk
                        +++G V+++++gi+r++g+ n+ + e+vef ++++g++ nL+ d+
    H28O16.1    52    NLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDN 98

                   VrivvmgsTdGlkrGdeVkdTG<-*
                   V++vv+g +  +++Gd Vk+TG
    H28O16.1    99 VGVVVFGNDKVIREGDIVKRTG    120

Bac_GDH: domain 1 of 1, from 298 to 312: score -0.1, E = 8
                   *->DlAtLSVAnrelrqL<-*
                      Dl++ +VA r+++ L
    H28O16.1   298    DLSKQAVAYRQMSLL    312

MOZ_SAS: domain 1 of 1, from 313 to 322: score 4.5, E = 3.4
                   *->lrhPPGnEIY<-*
                      lr+PPG+E Y
    H28O16.1   313    LRRPPGREAY    322

ATP-synt_ab: domain 1 of 1, from 224 to 406: score 376.3, E = 3e-109
                   *->eeadvvVyvlIGeRgrEvaefveelleegalktglmrtvlVaatade
                      +++  ++yv++G+++++va++v++l ++ga++    +t++V ata++
    H28O16.1   224    KKKLFCIYVAVGQKRSTVAQIVKRLTDAGAMD----YTIVVSATASD 266

                   pallRylapytattiAEYFrdqGkdVLliiDsltRfAqAlREiSlllgep
                   +a+l++lapy++++++E+Frd+Gk++L+i+D+l+++A+A+R++Slll++p
    H28O16.1   267 AAPLQFLAPYSGCAMGEHFRDNGKHALIIFDDLSKQAVAYRQMSLLLRRP 316

                   PgreGYPpdvfyllsrLlERAGklsdeggkGSITalptVltegdDisdPi
                   Pgre+YP+dvfyl+srLlERA+k++++ g+GS+Talp+++t+++D+s++i
    H28O16.1   317 PGREAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAGDVSAYI 366

                   pdnvisItDGqIvLsreLaerGiyPAIdvllSvSRvgsaa<-*
                   p+nvisItDGqI+L++eL+++G++PAI+v+lSvSRvgsaa
    H28O16.1   367 PTNVISITDGQIFLETELFYKGVRPAINVGLSVSRVGSAA    406

ATP-synt_ab_C: domain 1 of 1, from 408 to 516: score 146.4, E = 5.7e-41
                   *->gkahkqVagklkleLaqyrELqafaQlvGsDeLseeDKltQQLerAr
                       ka+kqVag++kleLaqyrE++afaQ +GsD L++ ++ +  L+r+
    H28O16.1   408    TKAMKQVAGSMKLELAQYREVAAFAQ-FGSD-LDASTQQL--LNRGV 450

                   rieedfLkQnqyspeDvFcpvekqyvsLrnIiFYdeAqkAleGvtlnkIv
                   r++e +LkQ+qy+p+                                  +
    H28O16.1   451 RLTE-LLKQGQYVPM-----------G----------------------I 466

                   eetidlfyallrGklddlpedalekigtidiakykalnkellekakkllk
                   ee++ ++ya+++G+ld +  +a+ k++++++a++++++++ll+++++ ++
    H28O16.1   467 EEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQ 516

                   <-*

    H28O16.1     -     -



[DB home][top]