Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/H20E11.3
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Query:  H20E11.3  CE19494    status:Partially_confirmed TR:Q9TYZ1 protein_id:AAC68975.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
DUF141          Domain of unknown function DUF141        55.8    2.5e-13   1
transketolase_C Transketolase, C-terminal domain          7.7       0.65   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
DUF141            1/1      16   139 ..     1   138 []    55.8  2.5e-13
transketolase_C   1/1     219   235 ..     1    17 [.     7.7     0.65

Alignments of top-scoring domains:
DUF141: domain 1 of 1, from 16 to 139: score 55.8, E = 2.5e-13
                   *->aagftCipggpitinkpvnisnpgfyPagwnessskippqfpanqnC
                      aa+++C ++ p+  +     +n+++yP+++   s+   + +p+n+nC
    H20E11.3    16    AAALNC-SQIPD--SYIY-AGNVFWYPNNS---SN--YVTIPPNFNC 53

                   swtinvPkGyyAklt..........lsakttisagddkddsitvtdsngn
                    ++i+      A +t+++  ++   l + ++     +++d+i+vtds+g+
    H20E11.3    54 NYIIK------APITssellhgyvvLWNLMK-----GVNDYIIVTDSLGA 92

                   lekvtsntgsdlespyyFvspkftinlstgnSVsndgnvtFgFsvqwspl
                     ++ s+++s+l+   +F++   +i+++t++   +++ ++F+F+v +s++
    H20E11.3    93 KQTLKSRSDSYLT-YDVFPGKEMSIQVVTKS---VNMGSQFNFKVAYSKV 138

                   p<-*
                   +
    H20E11.3   139 K    139

transketolase_C: domain 1 of 1, from 219 to 235: score 7.7, E = 0.65
                   *->GkaeilreGkDvtivay<-*
                      G a ++  G+Dvtiv++
    H20E11.3   219    GTAPLVTTGNDVTIVTF    235



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