Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H20E11.3
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Query: H20E11.3 CE19494 status:Partially_confirmed TR:Q9TYZ1 protein_id:AAC68975.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF141 Domain of unknown function DUF141 55.8 2.5e-13 1
transketolase_C Transketolase, C-terminal domain 7.7 0.65 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF141 1/1 16 139 .. 1 138 [] 55.8 2.5e-13
transketolase_C 1/1 219 235 .. 1 17 [. 7.7 0.65
Alignments of top-scoring domains:
DUF141: domain 1 of 1, from 16 to 139: score 55.8, E = 2.5e-13
*->aagftCipggpitinkpvnisnpgfyPagwnessskippqfpanqnC
aa+++C ++ p+ + +n+++yP+++ s+ + +p+n+nC
H20E11.3 16 AAALNC-SQIPD--SYIY-AGNVFWYPNNS---SN--YVTIPPNFNC 53
swtinvPkGyyAklt..........lsakttisagddkddsitvtdsngn
++i+ A +t+++ ++ l + ++ +++d+i+vtds+g+
H20E11.3 54 NYIIK------APITssellhgyvvLWNLMK-----GVNDYIIVTDSLGA 92
lekvtsntgsdlespyyFvspkftinlstgnSVsndgnvtFgFsvqwspl
++ s+++s+l+ +F++ +i+++t++ +++ ++F+F+v +s++
H20E11.3 93 KQTLKSRSDSYLT-YDVFPGKEMSIQVVTKS---VNMGSQFNFKVAYSKV 138
p<-*
+
H20E11.3 139 K 139
transketolase_C: domain 1 of 1, from 219 to 235: score 7.7, E = 0.65
*->GkaeilreGkDvtivay<-*
G a ++ G+Dvtiv++
H20E11.3 219 GTAPLVTTGNDVTIVTF 235