Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/H14N18.4a
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Query:  H14N18.4a  CE17976   transpeptidase status:Partially_confirmed TR:O61978 protein_id:AAC17783.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
G_glu_transpept Gamma-glutamyltranspeptidase            827.3   5.5e-245   1
FUSC            Fusaric acid resistance protein conse     5.8        3.2   1
HN              Hemagglutinin-neuraminidase               3.4          3   1
APC10           Anaphase-promoting complex, subunit 1     2.9        7.5   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
HN                1/1      20    67 ..     1    51 [.     3.4        3
FUSC              1/1     139   153 ..   106   120 .]     5.8      3.2
APC10             1/1     436   468 ..   189   221 .]     2.9      7.5
G_glu_transpept   1/1     119   626 ..     1   551 []   827.3 5.5e-245

Alignments of top-scoring domains:
HN: domain 1 of 1, from 20 to 67: score 3.4, E = 3
                   *->mykdnnrakttrvnldrkrtwRlifRpliLllvltiLf.LsliiLla
                      +++d n+   +r   + k+ +    +++i  +vl+iLf Ls+i+L++
   H14N18.4a    20    FSSDINHIHRNR--KEEKKGC--SKWTTIAFGVLAILFlLSTIALAI 62

                   iagir<-*
                   + gi+
   H14N18.4a    63 VVGIK    67

FUSC: domain 1 of 1, from 139 to 153: score 5.8, E = 3.2
                   *->LglsrPksagiamgl<-*
                      +g+ +P+s+gi++g+
   H14N18.4a   139    IGTVNPQSSGIGGGF    153

APC10: domain 1 of 1, from 436 to 468: score 2.9, E = 7.5
                   *->gPviersevahelfhgNHATptsvdfvtyatir<-*
                      +P  + s+v++   hgN   +ts+ ++  +++r
   H14N18.4a   436    APDHGTSHVSIIDSHGNAVSCTSTVNQILGSMR    468

G_glu_transpept: domain 1 of 1, from 119 to 626: score 827.3, E = 5.5e-245
                   *->aeiLrkGGNAvDAAVAaalcLgVVePhssGIGGGgFmliydaktgkv
                      +++L +GGNAvDA++A++lc+g V+P+ssGIGGG++m++y+a+tg +
   H14N18.4a   119    RDVLIEGGNAVDAMIASLLCIGTVNPQSSGIGGGFVMTLYNASTGMC 165

                   lviFDaREtAPaaAtkdmfldkdgkgdpklsktGglavgVPGevaGleea
                   ++i +aREtAPaaAt++mf      ++pk s+ G++++++P e++G++++
   H14N18.4a   166 QTI-NARETAPAAATETMF-----VDNPKESVMGYKSIATPSELHGFWTV 209

                   hkryGSGrLpwadLlePAIkLArdGFpVspylaaalasaeerflradpgl
                   + +yGSG+++wa+L++P+I+LA+dGFpVs +la          +r+++
   H14N18.4a   210 FNMYGSGKVSWARLFQPSITLAHDGFPVSSNLA----------MRKFSR- 248

                   aWfkiFlpp.tGrpplkaGdllkqPdLAkTLelIAeS.eGpeaFYrGelA
                      +iF +p+t+r+ +++Gd+lk++ LA T+ l+A++++++e FY+G +A
   H14N18.4a   249 ---DIFVNPkTNRV-YEEGDILKRQRLASTYALLANAtDPVELFYKGGMA 294

                   ealvadlqanGGiiTleDLanYkvevreP.lsgdyfrggytvyepPPsSg
                   ++++ ++ +nGG + + DLa+Y++ + +++l ++++ g+y++++pPP+S+
   H14N18.4a   295 QTIAGEITDNGGFVNESDLASYETTIDDApLLSTHLPGDYEMCGPPPPSS 344

                   GivllqiLniLegfdflsslglgsgesdpdsaeyvHllvEAmKlAyadRt
                   +++++ i +++ +++        +g+ d d+++ +H+l+EA+K+Aya+Rt
   H14N18.4a   345 FVITQNIIQVMAQYY-------KDGQVDLDDPLVYHRLIEAEKFAYAQRT 387

                   rYLGDPdFvpvptelveeLLskayakerralIndnaafpsppgppppdsp
                   + LGD +Fv+ ++ lv+e+ +++y+k++++lI+d+a++
   H14N18.4a   388 K-LGDVKFVESAKTLVDEMMTEEYTKKIASLIKDTAQTL----------- 425

                   ptAssyygaapaa.etdggTtHfsVvDrdGNaVSaTsTiNllFGSgvvvp
                      ++y+g++ ++ + d+gT+H+s++D++GNaVS+TsT+N+++GS++ +p
   H14N18.4a   426 ---DYYGGEKKDMaP-DHGTSHVSIIDSHGNAVSCTSTVNQILGSMRASP 471

                   gTGilLNNeMdDFsatPGvpNafglapshaNaiePGKRPlSSmsPtivlk
                    +Gi++N++MdDFs tPG++N+fg aps++N+i+PGKRP+SSmsP+i+++
   H14N18.4a   472 TLGIVWNDQMDDFS-TPGMKNSFGYAPSETNFIQPGKRPMSSMSPMIIYN 520

                   ...GkpvlyvlGapGGsrIiqavlqvivnvldfgmnlqeAvdaPRfhhds
                   ++++++ + v+Ga+GGs+Ii+a++q+++++l f++ +++AvdaPRfh+
   H14N18.4a   521 kneNRVEM-VTGASGGSYIISATAQTVIRTLLFNQTVKAAVDAPRFHN-- 567

                   gpgQllPdvvevEpfgfpeevlaeLedarGHkvkvvpvssgvgaiiiv..
                      Q+lP+++e+E+ ++p ++++ L +++ ++++vvp+  +v+++ i  +
   H14N18.4a   568 ---QYLPETTETEE-AMPLALREVLVEQYKQNFTVVPRQKSVVQALISle 613

                   gvlygasDpRrdG<-*
                   g+++g+sD+Rr++
   H14N18.4a   614 GFVEGNSDFRRKT    626



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