Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H12I19.5a
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Query: H12I19.5a CE16177 status:Predicted TR:O45621 protein_id:CAB11542.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Acyl_transf_3 Acyltransferase family 459.4 3e-134 1
CHD5 CHD5-like protein 6.1 1.4 1
FTSW_RODA_SPOVE Cell cycle protein 2.5 7.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CHD5 1/1 161 214 .. 154 199 .] 6.1 1.4
FTSW_RODA_SPOVE 1/1 204 218 .. 369 383 .] 2.5 7.1
Acyl_transf_3 1/1 2 351 .. 1 464 [] 459.4 3e-134
Alignments of top-scoring domains:
CHD5: domain 1 of 1, from 161 to 214: score 6.1, E = 1.4
*->VavipekwsilPldklgllsF........PtrvagsVSltiWvfavn
++++p+k +il ++ lgl sF ++ + t + +sV+ +W fa+
H12I19.5a 161 IRTLPQKCHILCFTILGLFSFmysklfctETEAFNSVFARVWQFAIG 207
ktisgif<-*
+ +++
H12I19.5a 208 IIANIVS 214
FTSW_RODA_SPOVE: domain 1 of 1, from 204 to 218: score 2.5, E = 7.1
*->iliGiLlnisretkk<-*
++iGi++ni +etk
H12I19.5a 204 FAIGIIANIVSETKL 218
Acyl_transf_3: domain 1 of 1, from 2 to 351: score 459.4, E = 3e-134
*->srrldldglRGlAIllVvlfHfaptlffgttdvfsllsylkpngylg
++rld +g RGlAIl+V++fHf+p+ f pngylg
H12I19.5a 2 NKRLDPQGVRGLAILSVLGFHFLPDVF--------------PNGYLG 34
VDlFFViSGfLmtmlllrrarqaeklslfssfteFykrRfkRilPlYllf
VD+FFV+SGfLm+mll++++ +a+ +s f++++ Fy rR+kRilPlYll
H12I19.5a 35 VDQFFVLSGFLMCMLLRKSSISASYKSNFQFIVAFYHRRLKRILPLYLL- 83
villslialyllfpdtaletnwrsalaaLllvsnrlkiheedYFdmflal
vi s i+l+++ pdtal tn+rs+ aL+++snr ++ eedYF + l
H12I19.5a 84 VIMSSSIFLFWMIPDTALLTNLRSGEKALIFISNRMATLEEDYFAR---L 130
ssaidifthlWSLsvEmqFYllvpliflllrlklpneklkrallrrallv
s a+difth+WSLsvE+qFYl++pli+ll+ + +k++
H12I19.5a 131 SYATDIFTHTWSLSVEVQFYLIIPLIYLLII-RTLPQKCH---------- 169
laivallglislvifalipd.syafnsvaldwfiyftfarlwqFlaGalv
++ + +lgl+s+ ++ l+ ++++afnsv far+wqF++G+++
H12I19.5a 170 ILCFTILGLFSFMYSKLFCTeTEAFNSV---------FARVWQFAIGIIA 210
ylwsksk.iqeissskskeevecklldesedssilawlafaakifrrrlp
+++s++k ++++++ + ++ ++
H12I19.5a 211 NIVSETKlWSDDYN-------------------------QIEGSKNAMIW 235
srlrkyllllallavaalpfalpnsltslfvrpyglglvsvkvlllvtlv
+++ k ++l+++++v+++p +l + +r +l+t+v
H12I19.5a 236 KKVMKNCCLVLMIVVLIYP----IKLPAGTIR------------TLFTIV 269
tallilvseglnntrlqgllgrsqlLsnrlLvylGdiSYslYLvHWPvia
t+lli++s++ ++ +Ls r+L+y+Gd SYslYL+HWP++a
H12I19.5a 270 TGLLIMISQN-DE-----------ILSVRVLTYIGDVSYSLYLIHWPIYA 307
ywklttggdmlikaillgfvflsvlqqygafwlltsnlgllllallvsil
ywkl + ++ + lll++l+s++
H12I19.5a 308 YWKLVLSAG-------------------------STMNFQLLLIFLISVV 332
laillhefvEkpylkllsr<-*
l+++++ef+Ek yl+l+ r
H12I19.5a 333 LSVISFEFFEKKYLRLPDR 351