Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H12D21.10
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Query: H12D21.10 CE31965 status:Partially_confirmed TR:Q9XTX0 protein_id:CAB07427.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF563 Protein of unknown function (DUF563) 65.6 2.5e-18 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF563 1/2 206 258 .. 91 146 .. 25.3 1.6e-06
DUF563 2/2 300 383 .. 171 269 .. 39.6 1e-10
Alignments of top-scoring domains:
DUF563: domain 1 of 2, from 206 to 258: score 25.3, E = 1.6e-06
*->CdvtHdVPAvvFSiGGyTGNyfHFCDFtDvliPLFiTarharFngeV
Cd++ + P++++++++ + y+HFCDF++++++L +++ F+ +V
H12D21.10 206 CDIIFEKPTIIMKLDAAVNLYHHFCDFFNLYASLHLNQT---FDQDV 249
qllVvnyks<-*
+ +++++
H12D21.10 250 DIILWDTHP 258
DUF563: domain 2 of 2, from 300 to 383: score 39.6, E = 1e-10
*->kDgrevHCFksavVGLriHreltvfyNdPtrapsgnsysmvDFrkFL
+D + +CFk++ +L+++ ++fyN P ++++s+ ++ F+ F+
H12D21.10 300 SDQK-KVCFKRVMMPLLARQRTGLFYNSPVVEGCSGSKMFRTFSQFI 345
RdaysLprdaptpeEkaanllqdaiakRPRLliiSRrrsyGRkilNedev
+++++++ ++ + k R++i+SR+++ RkilN e+
H12D21.10 346 LHRLGIRQPKA------------DLEK-ARIVILSRSTAF-RKILNIKEI 381
vr<-*
+r
H12D21.10 382 LR 383