Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H10E21.4
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Query: H10E21.4 CE19489 calcium-binding protein status:Confirmed TR:O76670 protein_id:AAC26922.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
efhand EF hand 93.6 3.9e-24 6
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
efhand 1/6 23 46 .. 6 29 .] 21.5 0.00048
efhand 2/6 50 78 .. 1 29 [] 18.0 0.0045
efhand 3/6 88 113 .. 4 29 .] 6.9 5.1
efhand 4/6 117 145 .. 1 29 [] 21.3 0.00055
efhand 5/6 158 186 .. 1 29 [] 9.3 1.1
efhand 6/6 195 223 .. 1 29 [] 30.3 1.7e-06
Alignments of top-scoring domains:
efhand: domain 1 of 6, from 23 to 46: score 21.5, E = 0.00048
*->FkefDkDgDGkIsfeEfkaalkkl<-*
F+++D+++DGk+s +E++++++k
H10E21.4 23 FDLVDANNDGKLSEKELITFMRKR 46
efhand: domain 2 of 6, from 50 to 78: score 18.0, E = 0.0045
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
+ +e F+ fD D++G +++ Ef+ ++ ++
H10E21.4 50 DGQEYFQRFDLDRNGHLDISEFVPLVYEM 78
efhand: domain 3 of 6, from 88 to 113: score 6.9, E = 5.1
*->eaFkefDkDgDGkIsfeEfkaalkkl<-*
e+Fk++D + DG +++ E ++ k+
H10E21.4 88 EFFKKMDLNDDGIVDKAEVEKIRKDN 113
efhand: domain 4 of 6, from 117 to 145: score 21.3, E = 0.00055
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
++ + +++D+++DG++++ Efk+ l++
H10E21.4 117 IIDGILSIADTNRDGQLTYAEFKNHLSSG 145
efhand: domain 5 of 6, from 158 to 186: score 9.3, E = 1.1
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
++ ++ + +D++gD k++ E+ ++ +k+
H10E21.4 158 QALQLLSFIDANGDNKLDQLELYTFSQKT 186
efhand: domain 6 of 6, from 195 to 223: score 30.3, E = 1.7e-06
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
+++++F+++Dk++DG+++ +E++++ +++
H10E21.4 195 DVQQIFAMLDKNQDGYLTENELLQLAQQF 223