Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H06I04.5
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Query: H06I04.5 CE27181 protein-tyrosine phoshatase status:Partially_confirmed TR:Q9N5P3 protein_id:AAF39870.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 199.4 5.5e-56 1
DSPc Dual specificity phosphatase, catalyt 19.7 0.00031 1
FliL Flagellar basal body-associated prote 11.1 0.068 1
HAMP HAMP domain 7.7 1.5 1
DUF252 Putative tyrosine phosphatase family 5.9 1 1
IL6 Interleukin-6/G-CSF/MGF family 4.7 2.3 1
Herpes_glycop_D Herpesvirus glycoprotein D 4.6 3.1 1
CcmH Cytochrome C biogenesis protein 4.3 6.8 1
PLRV_ORF5 Potato leaf roll virus readthrough pr 1.9 5.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HAMP 1/1 208 233 .. 1 26 [. 7.7 1.5
Herpes_glycop_D 1/1 207 241 .. 374 409 .] 4.6 3.1
CcmH 1/1 212 243 .. 110 141 .. 4.3 6.8
FliL 1/1 201 254 .. 1 68 [. 11.1 0.068
PLRV_ORF5 1/1 241 270 .. 1 31 [. 1.9 5.4
IL6 1/1 340 352 .. 142 154 .] 4.7 2.3
DSPc 1/1 536 566 .. 95 125 .. 19.7 0.00031
DUF252 1/1 549 567 .. 110 128 .. 5.9 1
Y_phosphatase 1/1 365 612 .. 1 274 [] 199.4 5.5e-56
Alignments of top-scoring domains:
HAMP: domain 1 of 1, from 208 to 233: score 7.7, E = 1.5
*->lllvlllalllalllalllarrltrP<-*
+++v++l+l++++++++l++r ++P
H06I04.5 208 IGGVVILLLVIVGIAVFLIMRKKSKP 233
Herpes_glycop_D: domain 1 of 1, from 207 to 241: score 4.6, E = 3.1
*->ivvlalligaiivgvvyyilrRrRkeakkyvrlpps<-*
i++++++ +++ivg++++ + R+++ + + pp
H06I04.5 207 IIGGVVILLLVIVGIAVFLIMRKKS-KPSSSEVPPA 241
CcmH: domain 1 of 1, from 212 to 243: score 4.3, E = 6.8
*->avLLvaLGgvvLylrsRRR.rksrasakvpapv<-*
++LL+ + g++++l+ R++++ +s+++pa++
H06I04.5 212 VILLLVIVGIAVFLIMRKKsKP-SSSEVPPAEP 243
FliL: domain 1 of 1, from 201 to 254: score 11.1, E = 0.068
*->lklliiiillivlavglsvGvavffmmkskaedserkeaasekaaea
+ ++ ii ++v++++++vG+avf+ m + + k++++
H06I04.5 201 SNMVWYIIGGVVILLLVIVGIAVFLIMRK-----------KSKPSSS 236
eaepsapekwvrpeqrdvlav<-*
e +p+ p +pe+ +++ +
H06I04.5 237 EVPPAEP---SAPEPKPAPKP 254
PLRV_ORF5: domain 1 of 1, from 241 to 270: score 1.9, E = 5.4
*->VDgsPaPePgPsPtPtPtPqPtPqPqPePvk<-*
++ +aPeP P+P P P P P+P P+P+Pv+
H06I04.5 241 AEP-SAPEPKPAPKPDPKPDPKPDPKPDPVP 270
IL6: domain 1 of 1, from 340 to 352: score 4.7, E = 2.3
*->LeeFLefslRAlR<-*
L+e L++ +RAlR
H06I04.5 340 LQEWLKSVYRALR 352
DSPc: domain 1 of 1, from 536 to 566: score 19.7, E = 0.00031
*->avdFIdkarqkggkVLVHCqAGiSRSAtlii<-*
a +++ ++++ ++VLVHC G+ R++tl++
H06I04.5 536 ALEILKFCETYKKNVLVHCSEGVGRTGTLVA 566
DUF252: domain 1 of 1, from 549 to 567: score 5.9, E = 1
*->PvLiHCnrGkHrTGlVIGc<-*
+vL+HC+ G rTG+++++
H06I04.5 549 NVLVHCSEGVGRTGTLVAI 567
Y_phosphatase: domain 1 of 1, from 365 to 612: score 199.4, E = 5.5e-56
*->NkeKNRykdilpyDhtRVkLk.egsDYINAnyidgpqsrtlvvykkp
N + R+++ ++ ++t+ +L ++ + +INAn +++ +
H06I04.5 365 NISERRHSMYICEPSTMAVLEgFKNPFINANVMMF----------GK 401
kayIaTQgPlp..............nTieDFWrMvweqkvtvIVMLtklv
+ I++QgP+++++++++++++++++T+e +W ++ +++v + V+L+ +v
H06I04.5 402 IEWIMAQGPMDgtekkkdetdkpkrSTCEKHWALIEQHNVAICVQLCGFV 451
EkgreeeKtCaqYWPeeggeeggsltyGditVtlvseekk.....ddddy
E+ +K Ca Y+ + ++gg l++ +++ ++++ +++ + +d++d+
H06I04.5 452 EGED--KK-CASYYSD---KVGGVLRFRNYSLKTIDIKTDlaeftDKKDF 495
tvRtleltn.gdesknea..kqeklkgetrtVthyhytgWPDhgvPesgp
t++t e+tn ++++++ ++tV + y +WP+hg+P +
H06I04.5 496 TLYTVEITNyR------KnkGEQ-----KKTVDILLYSAWPEHGAPQE-A 533
kslldflrkvrksqsqenesgeaspdsgprSsctgPivVHCSAGiGRTGt
+ l++l+ ++++++ ++VHCS G+GRTGt
H06I04.5 534 YPALEILKFCETYKK--------------------NVLVHCSEGVGRTGT 563
fiaidillqqleaegvvidifdivkelRsqRpgmVQteeQYiFiydaile
++ai ++++++ + +v+ i di+ +R++R+g+VQ + Q +i ++ +
H06I04.5 564 LVAIKYGIDLCLKKKVT-QIIDIILPVRQCRHGAVQDDTQVTYILLCVTK 612
<-*
H06I04.5 - -