Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H04M03.1
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Query: H04M03.1 CE20920 status:Partially_confirmed TR:Q9TYQ8 protein_id:AAD12791.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PEPCK Phosphoenolpyruvate carboxykinase 118.2 4e-32 5
TSC22 TSC-22/dip/bun family 3.0 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TSC22 1/1 54 69 .. 45 60 .] 3.0 9.6
PEPCK 1/5 59 86 .. 1 28 [. 10.5 0.036
PEPCK 2/5 177 245 .. 109 178 .. 58.5 1.6e-15
PEPCK 3/5 295 319 .. 228 252 .. 1.3 13
PEPCK 4/5 411 447 .. 406 442 .. 24.9 3.6e-06
PEPCK 5/5 491 617 .. 473 598 .. 22.1 2.2e-05
Alignments of top-scoring domains:
TSC22: domain 1 of 1, from 54 to 69: score 3.0, E = 9.6
*->SpEqLaqlqaqlqlae<-*
SpE+L +l + ql
H04M03.1 54 SPEVLTFLNDCVQLMT 69
PEPCK: domain 1 of 5, from 59 to 86: score 10.5, E = 0.036
*->aFveEkaeLcqPeqihiCDGSeeEnkeL<-*
F+ + L++P ++ iC GS E++eL
H04M03.1 59 TFLNDCVQLMTPCAVRICNGSVFEAQEL 86
PEPCK: domain 2 of 5, from 177 to 245: score 58.5, E = 1.6e-15
*->MkGRTMYVIPFSMGPvGsPlsKIGVElTDSpYVVaSMRIMTRmGtaV
M GRTMYV+PFSMG +Gs + +GV++TD p V++ R R+
H04M03.1 177 MSGRTMYVVPFSMGTIGSRRAVVGVQITDDPVLVLNLRTTFRVLSNI 223
LeaLgdndGeFVrCLHSVGaPlp<-*
++ ++ F rC+H +G P+p
H04M03.1 224 WDHIAA-TTNFLRCVHTIGMPRP 245
PEPCK: domain 3 of 5, from 295 to 319: score 1.3, E = 13
*->ASriArdEGWLAEHMLILGvtsPeG<-*
AS ++ +GWLAE IL +t+P++
H04M03.1 295 ASWLGAKQGWLAESAAILAITNPKN 319
PEPCK: domain 4 of 5, from 411 to 447: score 24.9, E = 3.6e-06
*->GVPIsAiIFGGRRpaGVPLVyearnWqHGVFmGaamr<-*
GVPIsA+IF+ RR + PL+ ea+ W+ GV ++a +r
H04M03.1 411 GVPISALIFANRRHDQYPLILEANTWEEGVCVAAGIR 447
PEPCK: domain 5 of 5, from 491 to 617: score 22.1, E = 2.2e-05
*->dYleHWLsl..gkrsdeakL.....PkIFHVNWFRkdeeGKFLWPGF
+Y++HWL ++ g +s+ + +++++P IF+ N +GK LWPG
H04M03.1 491 KYVKHWLEMgvGVKSSSENFenpppPQIFFTNLYQE-VDGKPLWPGG 536
GeNsRVLkWIlrRveGkagiAv..eTpIGyvPakgaLdLeGLddvssvdv
+N+R + I +R+ a+ ++ ++ +G+vP+ +L L+ + ++
H04M03.1 537 VDNARIFEYIYERCANPADLSKtiSSGLGIVPK--TLQLS--AG---TNL 579
skLlsvdkefWeqEveeireyfeeQvGadLPkeitaEL<-*
+ Ll vd +fW+ E+ ++r +f Q LP+ + + L
H04M03.1 580 APLLQVDIRFWLTELNKLRAFFNLQMECSLPPQLDKVL 617