Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F59F3.1
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Query: F59F3.1 CE03437 locus:ver-3 IG (immunoglobulin) superfamily (3 domains), tyrosine-protein kinase (KIN15\/KIN16 subfamily) (2 dom
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 191.5 1.4e-53 1
ig Immunoglobulin domain 66.2 1.1e-16 4
Plant_viral_rep Plant viral-response family 5.2 3 1
trp_syntA Tryptophan synthase alpha chain 2.5 9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ig 1/4 45 112 .. 1 50 [] 14.2 0.028
ig 2/4 264 315 .. 1 50 [] 11.4 0.16
ig 3/4 585 652 .. 1 50 [] 26.8 9.3e-06
ig 4/4 689 742 .. 1 50 [] 16.8 0.0054
Plant_viral_rep 1/1 764 794 .. 136 168 .] 5.2 3
trp_syntA 1/1 824 845 .. 124 145 .. 2.5 9
pkinase 1/1 847 1163 .. 1 294 [] 191.5 1.4e-53
Alignments of top-scoring domains:
ig: domain 1 of 4, from 45 to 112: score 14.2, E = 0.028
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le.................
+ ++ L Cs+ ++++ +++ + ++++ ++++ +++ ++ ++
F59F3.1 45 HTRLILKCSAH--HNGdLkYNFPSMEGnVGydennfkkrmeeyydda 89
tsslslti.svtpeDsgGtYtCvv<-*
++ +lt+++v+++D+ GtY+C
F59F3.1 90 FGDKVLTLnDVRESDT-GTYSCSS 112
ig: domain 2 of 4, from 264 to 315: score 11.4, E = 0.16
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le..tsslslti.svtpeD
+ +++ C + +p+ + + + +++ ++ s++++i+ ++ eD
F59F3.1 264 TNKLSIECPQC---SHdPgSHVHVDRHrIIgnKISTTVRIqHLELED 307
sgGtYtCvv<-*
s G YtC
F59F3.1 308 S-GKYTCIW 315
ig: domain 3 of 4, from 585 to 652: score 26.8, E = 9.3e-06
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le................t
G+ v+LtC + ++++ +v+W+ ++++ + ++ +++++++ ++ +
F59F3.1 585 GDNVKLTCVFP-LDSDdWsVSWRFENSkSSdissipttteteikqyS 630
sslslti.svtpeDsgGtYtCvv<-*
+l l++++vt + + GtYtCvv
F59F3.1 631 KHLILNLrDVTTSFT-GTYTCVV 652
ig: domain 4 of 4, from 689 to 742: score 16.8, E = 0.0054
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le...tsslslti.svtpe
+ ++C + g p+p ++W+++g + ++++ ++ l++++++ e
F59F3.1 689 DQYFEINCNMT--GTPpPvYQWFKDGNpYThgdVDGSILRVsRARGE 733
DsgGtYtCvv<-*
D+ G++ C +
F59F3.1 734 DD-GEFHCLA 742
Plant_viral_rep: domain 1 of 1, from 764 to 794: score 5.2, E = 3
*->tlqFcwhvalGLtililivglYafaagkygsrr<-*
+l+F w++al +li i++++++ +++ s+r
F59F3.1 764 SLFFYWFLAL--LLLISIIAVFLLTCKLRASNR 794
trp_syntA: domain 1 of 1, from 824 to 845: score 2.5, E = 9
*->DLPpEEadplraaaerhgidlI<-*
DLP+EE+ ++ ++ +++ id++
F59F3.1 824 DLPVEERTYYLPYNNDYEIDPV 845
pkinase: domain 1 of 1, from 847 to 1163: score 191.5, E = 1.4e-53
*->yelleklGeGsfGkVykakhkd.........ktgkiVAvKilkkeke
+e+l ++G+G+fG+V+k+ + + ++++ ++kt +VAvK +
F59F3.1 847 LEILNPIGSGHFGVVKKGLLGMaypkskiesKTRLPVAVKSST-NPF 892
sikek.rflrEiqilkrLs.HpNIvrligvfed..tddhlylvmEymegG
+++ +++ E++++ + + pN++ lig+++ + + + ly+v+E+ +gG
F59F3.1 893 NVELQkMMAEELKVMCAIPkNPNVLALIGAVTKnmRQGQLYIVTEFIDGG 942
dLfdylrrng........................................
L+++l++++++ ++ ++++ + +++ +++ +++ + +++ ++++
F59F3.1 943 NLREFLQAHRntfinelvedehvpvddsylvpnsvkkkiykfdeklgegt 992
.......gplsekeakkialQilrGleYLHsngivHRDLKpeNILldend
+ +++++l ++++i lQi++G++ L + +vHRDL+ +N+L+++
F59F3.1 993 rllvedpDALCTSDLLSIGLQIAKGMAWLADVPCVHRDLACRNVLITKT- 1041
gtvKiaDFGLArlle....sssklttfvGTpwYmmAPEvilegrgysskv
v+iaDFGL+++ +++ +k++ + p+++m+ E+ +e +++ k+
F59F3.1 1042 KIVRIADFGLSKKHTnktyYRTKKSKDTPLPVRWMPLEC-IEEFKFTQKS 1090
DvWSlGviLyElltggplfpgadlpaftggdevdqliifvlklPfsdelp
DvWS+G+ LyE++t g ++P+++
F59F3.1 1091 DVWSFGICLYEIFTLG-------------------------GTPYPN--- 1112
ktridpleelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsa
+d+++ + i ++ r ++p++c +e ++L+k c++++P++Rp
F59F3.1 1113 ---CDTFNVIEFIRNG--NRNKQPEYCHDEIYELMKVCWQFNPKDRP--- 1154
takeilnhpwf<-*
t+ ++ +f
F59F3.1 1155 TFNDC--ITFF 1163