Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F59E12.13
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F59E12.13 CE29413 status:Partially_confirmed TR:O01906 protein_id:AAB54261.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_transf_10 Glycosyltransferase family 10 (fucosy 753.1 1.1e-222 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glyco_transf_10 1/1 6 383 .. 1 502 [] 753.1 1.1e-222
Alignments of top-scoring domains:
Glyco_transf_10: domain 1 of 1, from 6 to 383: score 753.1, E = 1.1e-222
*->lsdaflrllwrekllGllitvppLllaiaawigleeikewkksplyL
+s+++++ll++++llG+++ ++++i++++g+++++++++++ly
F59E12.13 6 ASVYRYLLLGVCALLGIYT----VYSIIGYDDGSHVPIHRPQRHLY- 47
SNDHELdVpiLlilSqapqGSrfptleenrillwtwpFndrgaPvppsrc
l++Sq+++GSrf++l+++ril+wt++F+ a+vp++++
F59E12.13 48 -----------LTVSQDRIGSRFGKLAPKRILYWTTIFG---ATVPSTAL 83
slsydntarcrltanRselesAdavlFNAGHhrDlskgppmdlppeftqv
s+++++t+rc++++nR++l+sAdav+F H++D+sk+p+ ++
F59E12.13 84 SDCPGLTDRCVIDTNRHQLDSADAVVF---HAADISKFPL-PV------- 122
rarAedaDavllayednaaaaeaLatdfpRppgQpwVwaSmESPsnsgRF
+R+p+Q++V++SmE+P+nsgRF
F59E12.13 123 ----------------------------SRKPDQIFVFNSMETPDNSGRF 144
AVPGFKiNVLNglqilldgyfNwtlSyradsDafhpYGylepltakarkR
AVP dg+fNwt++++++sDa+h+YG+++++t++a++R
F59E12.13 145 AVP--------------DGFFNWTSTHLYSSDAIHKYGTFLIPTQIAESR 180
GFKVqsqvVeaplnlsaKaklaAWVVSNcntrskRerfykqLkkHlqVDv
GFKVqs++V++++ l++++k++++++SNc+t+skRe+++++L+kH++V++
F59E12.13 181 GFKVQSYYVQPKR-LVKTMKGIFGLISNCHTKSKRELALQELGKHINVTI 229
yGrvanplplksgcskGVelietlsqYkFYLaFENSqheDYvTEKlWkNA
+G++a++++lks+c++GVe+i++++qY+FY+a+EN++++DYvTEK+W+ +
F59E12.13 230 GGKCASDDRLKSICPAGVECIDVFEQYPFYIAIENTVCNDYVTEKIWS-R 278
lqagtiPvVLgPsRavyedFvPpksFIhVDDFkSakElAdYLlyLdknpt
+++++iP+V++ R+vy++++PpksFI++DD+k+++E+A++L++L++n+t
F59E12.13 279 ITVPSIPIVMR--RRVYQNILPPKSFIAMDDYKNPSEMANHLRSLEANST 326
AYLDmLYENPLNTLDGKAYFYQDLSFKKILDFFKTILENDTIYHKYseYF
A Y+eYF
F59E12.13 327 A--------------------------------------------YGEYF 332
eWRedlrvrlfswdalrVlEydegfCrvCrllqkapdllelSryktipnl
eWR+++++++++w+a++ y++g+CrvC+ll+ka+d++++ +yk+++n+
F59E12.13 333 EWRQKGLWTSAPWNAPG---YRNGLCRVCELLWKAKDNETE-VYKSYDNI 378
akWFq<-*
+kWF+
F59E12.13 379 WKWFD 383