Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F59E10.1
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Query: F59E10.1 CE11492 locus:orc-2 origin recognition complex, second largest subunit ORC2 status:Confirmed SW:Q21037 protein_id:CAA85415.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ORC2 Origin recognition complex subunit 2 635.0 4e-187 1
Tautomerase Tautomerase enzyme 3.0 9.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Tautomerase 1/1 71 83 .. 53 65 .] 3.0 9.5
ORC2 1/1 95 422 .. 1 359 [] 635.0 4e-187
Alignments of top-scoring domains:
Tautomerase: domain 1 of 1, from 71 to 83: score 3.0, E = 9.5
*->enwgvgGeslgar<-*
en++++G+s+++r
F59E10.1 71 ENYFMQGKSASER 83
ORC2: domain 1 of 1, from 95 to 422: score 635.0, E = 4e-187
*->yFeanssskvltsdrTlqrldlpkldeetlrnllseiktseeeeGsi
++++n+++++++++++++++d++k+d+++lrn++++++++e+e+
F59E10.1 95 AGNGNTEEIEEDDEISNAITDFTKCDLPGLRNYITKKDNTEFEK--- 138
daLehqhealFpkWmleLaaGFNilLYGlGSKrdLLesFeeellqSSGGN
+Leh+++++F+kW+l+LaaGFNilL+G+GSKrd+L++Fe+el++
F59E10.1 139 -RLEHLADNDFGKWKLYLAAGFNILLHGVGSKRDVLTEFENELSD----- 182
DtNdstiivvnGffpgLtvKeiLnSIteeildtpaaprspllimdlilir
+t+++v+++++gL+vK++L++I+e+++++++++r++++i+++++ir
F59E10.1 183 ----YTYMRVDARKDGLNVKVLLGAINENMKLNCNVKRGQSTISWARSIR 228
fksSFassleLfLLihNLDspmSPLrkektQsiLaqLasipniyLiASVD
+k+ +s++L+L+i+N+++p+ +++++++++++L+++++++LiA+VD
F59E10.1 229 RKM---NSQQLILIIDNIEAPD---WRSDQEAFCELLENRDSVKLIATVD 272
HinfpLLWDssklSSFNFvwhdcTTFapytnEtsyene.llsLlvrrskg
Hi+++++W+s++lSS++Fv+++++TF+++++E+++++++ll+L++r++++
F59E10.1 273 HIYSTFIWNSRQLSSLSFVHITINTFEIPLQELMTGDSrLLGLDARSNQS 322
slalsSlkhVLrSLteNsRgiFrLlvkyqLdnkedtqDFDArggsyvGls
s+++sSl+++++SL++Ns+++FrL++++++d+k++ ++
F59E10.1 323 SHTMSSLDVFWKSLAVNSQKLFRLFFQMYFDTKKP-------------VK 359
FrdfFqacreaFlvssdlalRaQLtEFiDHkliksKRgvdgseqLliPvd
F+d+F+a++++F++s+d+alR+QL+EF+DH+++k++Rg+dg++qL+++v+
F59E10.1 360 FWDLFNAAKDDFIASTDAALRTQLVEFKDHRVLKWTRGDDGNDQLSGIVE 409
lglLteFLEseee<-*
l+l+teFLEs+++
F59E10.1 410 LRLVTEFLESKNM 422