Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F59A3.9
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Query: F59A3.9 CE11432 status:Partially_confirmed TR:P91361 protein_id:AAB37823.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PAP_assoc PAP/25A associated domain 67.9 3.1e-18 1
NTP_transf_2 Nucleotidyltransferase domain 9.8 0.3 1
DUF141 Domain of unknown function DUF141 5.4 5.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NTP_transf_2 1/1 82 145 .. 1 84 [. 9.8 0.3
DUF141 1/1 300 313 .. 125 138 .] 5.4 5.4
PAP_assoc 1/1 288 345 .. 1 63 [. 67.9 3.1e-18
Alignments of top-scoring domains:
NTP_transf_2: domain 1 of 1, from 82 to 145: score 9.8, E = 0.3
*->ieeilkkikealkelygavaevylfGSyarGtylpgdSDIDllvvsp
+++++ +++ ++k++y+ + +++GSy G + +SDID+ v +p
F59A3.9 82 LRKAAAQFRAVMKQEYP-DSTCFITGSYPAGV-DIFSSDIDFTVKVP 126
dpvdrefalffslarlgkrike.vkrleelaeiekele<-*
e+ + +++l+ ++kel+
F59A3.9 127 TL-------------------EgANPFLKLMQLRKELS 145
DUF141: domain 1 of 1, from 300 to 313: score 5.4, E = 5.4
*->nvtFgFsvqwsplp<-*
+++F+F+++w++++
F59A3.9 300 YSEFNFKWNWISIK 313
PAP_assoc: domain 1 of 1, from 288 to 345: score 67.9, E = 3.1e-18
*->sLGvLLigFFeyYgrreFdyedfvIsirtGqsgsllpKeekgwdkkn
sL+vL+igF++yY+ eF++++++Isi++G +l++K+ k + kn
F59A3.9 288 SLAVLFIGFMKYYS--EFNFKWNWISIKHG--NVLKKKWSKTRVPKN 330
vlnirqpspLcIeDPf<-*
++++++ +++++DP+
F59A3.9 331 -GMPKDCRFIVVADPL 345