Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F58E6.1a
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Query: F58E6.1a CE25921 SH2 domain status:Partially_confirmed TR:Q20977 protein_id:CAA94771.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 58.0 8.3e-20 1
TSC22 TSC-22/dip/bun family 6.3 0.79 1
Flavi_propep Flavivirus polyprotein propeptide 5.7 3.2 1
GSH_synthase Eukaryotic glutathione synthase 4.2 6.9 1
Bac_thur_toxin Bacillus thuringiensis toxin 3.9 3.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-C3HC4 1/1 52 95 .. 1 50 [] 58.0 8.3e-20
TSC22 1/1 196 209 .. 47 60 .] 6.3 0.79
Flavi_propep 1/1 316 327 .. 77 88 .] 5.7 3.2
GSH_synthase 1/1 406 431 .. 89 110 .] 4.2 6.9
Bac_thur_toxin 1/1 785 816 .. 204 235 .] 3.9 3.2
Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 52 to 95: score 58.0, E = 8.3e-20
*->CrICleelkepsndfplilpCgHsGslkyfCrsClerWls..gnttv
CrIC++ + + + +pC ++G+++ ++++Cl++W++ ++++t
F58E6.1a 52 CRICQMHEGDMV------RPCDCAGTMGDVHEECLTKWVNmsNKKT- 91
kCplC<-*
C++C
F58E6.1a 92 -CEIC 95
TSC22: domain 1 of 1, from 196 to 209: score 6.3, E = 0.79
*->EqLaqlqaqlqlae<-*
EqL ++q lq +e
F58E6.1a 196 EQLPFIQRTLQICE 209
Flavi_propep: domain 1 of 1, from 316 to 327: score 5.7, E = 3.2
*->rCtktgesRRsR<-*
+C+ ++ +RRsR
F58E6.1a 316 KCGEAENHRRSR 327
GSH_synthase: domain 1 of 1, from 406 to 431: score 4.2, E = 6.9
*->eARLllErSrA..iKCP..dIstqLa<-*
eA L+lErS+A+ + P +dI+t+++
F58E6.1a 406 EAKLFLERSFAdlVRHPlsDIPTHVS 431
Bac_thur_toxin: domain 1 of 1, from 785 to 816: score 3.9, E = 3.2
*->eVkikaLtfvQpLvssnaapIvDlfnvlnysl<-*
eV + a ++v + v+++ a++ Dl +++ +
F58E6.1a 785 EVTVPAVRVVRLQVDYRNASVSDLQKIHKWNA 816