Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F58A4.7a
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Query: F58A4.7a CE01018 AP-4 status:Confirmed SW:P34474 protein_id:CAA80167.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HLH Helix-loop-helix DNA-binding domain 64.0 1.1e-15 1
SBP SBP domain 5.0 3.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SBP 1/1 62 78 .. 63 79 .] 5.0 3.9
HLH 1/1 62 113 .. 1 53 [] 64.0 1.1e-15
Alignments of top-scoring domains:
SBP: domain 1 of 1, from 62 to 78: score 5.0, E = 3.9
*->RrRLagHNeRRRKsspe<-*
Rr+ a+ NeRRR +s +
F58A4.7a 62 RRQIANCNERRRMQSIN 78
HLH: domain 1 of 1, from 62 to 113: score 64.0, E = 1.1e-15
*->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
rR+ +n+ ERrR+++iN +f +Lr llP +++KlsKa+iL+++ +
F58A4.7a 62 RRQIANCNERRRMQSINAGFLALRALLPR-KEGEKLSKAAILQQTAD 107
YIksLq<-*
+++L
F58A4.7a 108 MVHQLL 113