Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F57H12.6
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Query: F57H12.6 CE17127 status:Partially_confirmed TR:O45097 protein_id:AAC02602.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF148 Domain of unknown function DUF148 61.5 4.8e-15 2
ApoC-I Apolipoprotein C-I (ApoC-1) 11.2 0.041 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF148 1/2 29 46 .. 1 18 [. 4.2 12
DUF148 2/2 84 176 .. 1 96 [. 58.5 3.2e-14
ApoC-I 1/1 159 195 .. 25 61 .] 11.2 0.041
Alignments of top-scoring domains:
DUF148: domain 1 of 2, from 29 to 46: score 4.2, E = 12
*->PpFLrnvpaearqeffaI<-*
PpFL +p++a+ ++ +I
F57H12.6 29 PPFLDSLPEDAQEKINDI 46
DUF148: domain 2 of 2, from 84 to 176: score 58.5, E = 3.2e-14
*->PpFLrnvpaearqeffaIlknNesLTiaqkeeqlqaWAekygGvsdq
+pFL+++p++ +++f aI+k + s + ++k e+++a+Aek +d+
F57H12.6 84 LPFLKGLPKDKLAKFEAIFK-DRSVPWSEKPEKIEALAEKEL-DGDN 128
ykeFqknvkaqeaevkknvtqvIsnLSPaAKsVqaqLeaIldNknlTrk<
+k+F+++++++e+e k++++ +LS +AK++++++ea + k T k
F57H12.6 129 LKKFKEFKEKKEKE-DKEYKEKETKLSDEAKKAHEKIEALNKQKISTKK 176
-*
F57H12.6 - -
ApoC-I: domain 1 of 1, from 159 to 195: score 11.2, E = 0.041
*->KAraaieriKqselpaKtRnWFsEaFkKvkeklKttf<-*
KA++ ie + ++ +++K ++F+ F+K+ +lK
F57H12.6 159 KAHEKIEALNKQKISTKKIAYFATVFHKISTRLKLLN 195