Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F57F5.1
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Query: F57F5.1 CE05999 cysteine protease status:Partially_confirmed TR:Q20950 protein_id:CAB00098.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_C1 Papain family cysteine protease 386.6 4.1e-115 1
AMP-binding AMP-binding enzyme 3.0 8.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AMP-binding 1/1 136 146 .. 363 373 .] 3.0 8.2
Peptidase_C1 1/1 146 397 .. 1 337 [] 386.6 4.1e-115
Alignments of top-scoring domains:
AMP-binding: domain 1 of 1, from 136 to 146: score 3.0, E = 8.2
*->lehPgVaeAaV<-*
++hP V++AaV
F57F5.1 136 MTHPEVEDAAV 146
Peptidase_C1: domain 1 of 1, from 146 to 397: score 386.6, E = 4.1e-115
*->lPesfDWRe.Wkgga.VtpVKdQGiqCGSCWAFSavgalEgrycikt
+P+sfD R+ W+++ +++ ++dQ+ +CGSCWA+Sa++++++r+ci++
F57F5.1 146 VPDSFDSRTaWPNCPsISKIRDQS-SCGSCWAVSAAETISDRICIAS 191
gtkawggklvsLSEQqLvDCdgedygnngesCGyGCnGGGlmdnAfeYik
+ ++ +s+S+ ++ C+g + CG+GCnG G+++ A+++ +
F57F5.1 192 N----AKTILSISADDINACCG-----M--VCGNGCNG-GYPIEAWRHYV 229
keqIsnNgGlvtEsdYe.k.gCkPYtdf.PCgkdggndtyy.pCpgkayd
k +G vt+++Y++k+gCkPY+ ++PC++++ n+t+y+pCp+ +y
F57F5.1 230 K------KGYVTGGSYQdKtGCKPYP-YpPCEHHV-NGTHYkPCPSNMY- 270
pndTgtCkynckknskypktyakikgygdvpynvsTydEealqkalaknG
+T +C+++c+ + y ty ++ ++g+ +y vs + +++qk+++++G
F57F5.1 271 --PTDKCERSCQAG--YALTYQQDLHFGQSAYAVS-KKAAEIQKEIMTHG 315
PvsVaidasedskgDFqlYksGendvgyGvYkhtsageCggtpfteLdHA
Pv+Va++++e DF +Y++G vY+ht ag+ g +HA
F57F5.1 316 PVEVAFTVYE----DFEHYSGG-------VYVHT-AGASLG------GHA 347
VliVGYGteneggtfdetssskksesgiqvssgsngssgSSgssgapied
V++ G+G++n g
F57F5.1 348 VKMLGWGVDN-G-------------------------------------- 358
kgkdYWIVKNSWGtdWGEnGYfriaRgknksgkneCGIaseasypi<-*
++YW+++NSW++dWGEnGYfri+Rg+n eCGI+ ++ +i
F57F5.1 359 --TPYWLCANSWNEDWGENGYFRIIRGVN-----ECGIEGGVVGGI 397