Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F57C12.1
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Query: F57C12.1 CE31188 status:Partially_confirmed TR:Q20942 protein_id:AAA83298.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Astacin Astacin (Peptidase family M12A) 335.6 1.8e-103 1
CUB CUB domain 44.3 8.6e-12 1
tsp_1 Thrombospondin type 1 domain 8.1 0.61 1
DSL Delta serrate ligand 6.9 0.98 1
EB EB module 5.6 8.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Astacin 1/1 122 313 .. 1 200 [] 335.6 1.8e-103
DSL 1/1 335 345 .. 57 67 .] 6.9 0.98
EB 1/1 332 345 .. 45 63 .] 5.6 8.5
CUB 1/1 385 484 .. 13 116 .] 44.3 8.6e-12
tsp_1 1/1 632 675 .. 1 53 [] 8.1 0.61
Alignments of top-scoring domains:
Astacin: domain 1 of 1, from 122 to 313: score 335.6, E = 1.8e-103
*->rrWpngsGiVvIPYvisssysgrersliraAmrhwenkTCirFvprt
++W+ ++ +I + +++s + r+ ir+Am w+++TC+rF++ +
F57C12.1 122 KKWDTRG---PISFDYAESIPFQTRQKIRSAMLLWQQHTCLRFEEGG 165
sagendylrffsgdGCwSyVGrrggGaeQevSlganGCdyfGtivHElgH
+ +d+l+ff+g+GC S+VGr+ gG Q +S++++GCd +G+i+HE+gH
F57C12.1 166 --PNVDRLEFFDGGGCSSFVGRV-GGT-QGISISTPGCDVVGIISHEIGH 211
ALGFwHEQsRpDRDdyVsInwqNIdpgqeynFdKydpdqvdslGvPYDYg
ALG++HEQ+RpD ++++ In++NI+ +++ nF+ + +++++++++PYD g
F57C12.1 212 ALGIFHEQARPDQERHIAINYNNIPLSRWNNFQAVGENHAETYNLPYDTG 261
SiMHYgpyaFSkngskpTIvpkdnkvyqatiGQReglSflDikkiNklYn
S+MHYgpy F+++++ pTI++++ v q+tiGQR+g+SflD++ iN++Y+
F57C12.1 262 SVMHYGPYGFASDPYTPTIRTLER-VQQSTIGQRAGPSFLDYQAINMAYG 310
Cpe<-*
C+e
F57C12.1 311 CTE 313
DSL: domain 1 of 1, from 335 to 345: score 6.9, E = 0.98
*->lCleGWkGeyC<-*
+C+eG++G yC
F57C12.1 335 ACPEGLSGRYC 345
EB: domain 1 of 1, from 332 to 345: score 5.6, E = 8.5
*->gmCeCpegvpkttrvngvC<-*
+mC Cpeg + +C
F57C12.1 332 SMCACPEG-----LSGRYC 345
CUB: domain 1 of 1, from 385 to 484: score 44.3, E = 8.6e-12
*->sisSPnYPnrsdYppnkeCvWrIrappgyrvVeLtFqd.FdlEdhdg
+i+SPnYP+ ++p ++eC W+I ap + r V++ F+ +Fd +d+
F57C12.1 385 YITSPNYPD--KFPIDTECNWIIAAPIEGR-VFMEFEGdFDFLCEDT 428
aCryDyvEirDGdpssspllGrfCGsgkP.edirStsnrmlikFvsDasv
C + yvE+ + +r+C s +P+ ++S+ n m i+
F57C12.1 429 -CDKAYVEVKYHSDKR-LTGARYCCSLLPkNRFISFKNEMIIIMRG-YRS 475
skrGFkAty<-*
s++GFkA++
F57C12.1 476 SGAGFKAKF 484
tsp_1: domain 1 of 1, from 632 to 675: score 8.1, E = 0.61
*->spWseW.SpCSVTCG.kGirtRqRtcnspaPqkkggkpCtgdaqeEt
+ WseW+ +CS CG+ G+r R+R c+ ++ C +
F57C12.1 632 GAWSEWqGECSQQCGgCGHRLRKRECK--------KEACRKEE---K 667
eaCmmdkC<-*
++C+ C
F57C12.1 668 RPCNFSAC 675