Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F57C12.1
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Query:  F57C12.1  CE31188    status:Partially_confirmed TR:Q20942 protein_id:AAA83298.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Astacin  Astacin (Peptidase family M12A)                335.6   1.8e-103   1
CUB      CUB domain                                      44.3    8.6e-12   1
tsp_1    Thrombospondin type 1 domain                     8.1       0.61   1
DSL      Delta serrate ligand                             6.9       0.98   1
EB       EB module                                        5.6        8.5   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Astacin    1/1     122   313 ..     1   200 []   335.6 1.8e-103
DSL        1/1     335   345 ..    57    67 .]     6.9     0.98
EB         1/1     332   345 ..    45    63 .]     5.6      8.5
CUB        1/1     385   484 ..    13   116 .]    44.3  8.6e-12
tsp_1      1/1     632   675 ..     1    53 []     8.1     0.61

Alignments of top-scoring domains:
Astacin: domain 1 of 1, from 122 to 313: score 335.6, E = 1.8e-103
                   *->rrWpngsGiVvIPYvisssysgrersliraAmrhwenkTCirFvprt
                      ++W+ ++   +I + +++s   + r+ ir+Am  w+++TC+rF++ +
    F57C12.1   122    KKWDTRG---PISFDYAESIPFQTRQKIRSAMLLWQQHTCLRFEEGG 165

                   sagendylrffsgdGCwSyVGrrggGaeQevSlganGCdyfGtivHElgH
                     + +d+l+ff+g+GC S+VGr+ gG  Q +S++++GCd +G+i+HE+gH
    F57C12.1   166 --PNVDRLEFFDGGGCSSFVGRV-GGT-QGISISTPGCDVVGIISHEIGH 211

                   ALGFwHEQsRpDRDdyVsInwqNIdpgqeynFdKydpdqvdslGvPYDYg
                   ALG++HEQ+RpD ++++ In++NI+ +++ nF+ + +++++++++PYD g
    F57C12.1   212 ALGIFHEQARPDQERHIAINYNNIPLSRWNNFQAVGENHAETYNLPYDTG 261

                   SiMHYgpyaFSkngskpTIvpkdnkvyqatiGQReglSflDikkiNklYn
                   S+MHYgpy F+++++ pTI++++  v q+tiGQR+g+SflD++ iN++Y+
    F57C12.1   262 SVMHYGPYGFASDPYTPTIRTLER-VQQSTIGQRAGPSFLDYQAINMAYG 310

                   Cpe<-*
                   C+e
    F57C12.1   311 CTE    313

DSL: domain 1 of 1, from 335 to 345: score 6.9, E = 0.98
                   *->lCleGWkGeyC<-*
                      +C+eG++G yC
    F57C12.1   335    ACPEGLSGRYC    345

EB: domain 1 of 1, from 332 to 345: score 5.6, E = 8.5
                   *->gmCeCpegvpkttrvngvC<-*
                      +mC Cpeg       + +C
    F57C12.1   332    SMCACPEG-----LSGRYC    345

CUB: domain 1 of 1, from 385 to 484: score 44.3, E = 8.6e-12
                   *->sisSPnYPnrsdYppnkeCvWrIrappgyrvVeLtFqd.FdlEdhdg
                      +i+SPnYP+  ++p ++eC W+I ap + r V++ F+ +Fd   +d+
    F57C12.1   385    YITSPNYPD--KFPIDTECNWIIAAPIEGR-VFMEFEGdFDFLCEDT 428

                   aCryDyvEirDGdpssspllGrfCGsgkP.edirStsnrmlikFvsDasv
                    C + yvE+    +      +r+C s +P+  ++S+ n m i+
    F57C12.1   429 -CDKAYVEVKYHSDKR-LTGARYCCSLLPkNRFISFKNEMIIIMRG-YRS 475

                   skrGFkAty<-*
                   s++GFkA++
    F57C12.1   476 SGAGFKAKF    484

tsp_1: domain 1 of 1, from 632 to 675: score 8.1, E = 0.61
                   *->spWseW.SpCSVTCG.kGirtRqRtcnspaPqkkggkpCtgdaqeEt
                      + WseW+ +CS  CG+ G+r R+R c+        ++ C  +
    F57C12.1   632    GAWSEWqGECSQQCGgCGHRLRKRECK--------KEACRKEE---K 667

                   eaCmmdkC<-*
                   ++C+   C
    F57C12.1   668 RPCNFSAC    675



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