Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F57B9.4a
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Query: F57B9.4a CE28469 4-hydroxybenzoate octaprenyltransferase status:Partially_confirmed TR:Q95QE3 protein_id:AAK73883.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UbiA UbiA prenyltransferase family 225.6 7.4e-64 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UbiA 1/1 77 342 .. 1 290 [] 225.6 7.4e-64
Alignments of top-scoring domains:
UbiA: domain 1 of 1, from 77 to 342: score 225.6, E = 7.4e-64
*->tllvlapvlaglalaagg.vntgeadllllllallgfflaraagnvi
t+l+++p+ +++a+a + ++ +++ ++l l+ +g+fl+r+ag+vi
F57B9.4a 77 TWLLYWPCTWSIAMATPAgQ---LPSIYMLSLFGAGAFLMRSAGCVI 120
NDyfDrdiDaineRrisTpnRPlpsGrisprealtfallllalglalall
ND++D d+D+++eR T+ RPl+ G +++++a+ +++ ll +la++l+
F57B9.4a 121 NDLWDKDFDKKVER---TKLRPLACGSLTEKQAIGLLAGLLSSSLAILLQ 167
lnnlafllallglalavlYsypYtrllKRytplgtvvlgaagalpplmGw
ln++++++++ ++al+v+Y+++ KR+t+++++vlg+++ +++l Gw
F57B9.4a 168 LNWYSVAVGASSMALVVGYPLA-----KRFTYWPQFVLGLTFNWGALLGW 212
vAvtgqltpslsvvailLflalflwtaphdiakaledvedDrkaGlkslp
+A+ g l++ s + + +++a+ wt+ +d+++a++d+ dD +G+ks++
F57B9.4a 213 CALKGDLSS--SAPFW-MYAAALQWTLIYDTIYAHQDKADDIMIGVKSTA 259
vvlGeekakkiallllavavalllllgllgglgllgilylivvlllgall
++lG + +kk+++++ + +va+l++ g+ + + + ++v+l++ ++
F57B9.4a 260 LRLGAD-TKKWLSAFGVGTVASLTACGIASD----QTWPYYVALAATTAQ 304
lvlaiklvrremdpekiekarlllTfvaslilllvlfaalllaf<-*
l +++ v+ d++ ++ + f + +++++lf++++++
F57B9.4a 305 LGWQVGTVDI--DNGSDCWDK----FKSNSWMGIILFSGIVAST 342