Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F55G11.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F55G11.2 CE18748 status:Predicted TR:Q9XUD8 protein_id:CAB05218.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF141 Domain of unknown function DUF141 184.6 1.6e-51 1
Stanniocalcin Stanniocalcin family 8.8 0.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Stanniocalcin 1/1 1 19 [. 1 19 [. 8.8 0.2
DUF141 1/1 17 135 .. 1 138 [] 184.6 1.6e-51
Alignments of top-scoring domains:
Stanniocalcin: domain 1 of 1, from 1 to 19: score 8.8, E = 0.2
*->mLqfsgLiLvflvldtAag<-*
mLq+ ++L+f+v + Aag
F55G11.2 1 MLQNILVCLAFAVVVSAAG 19
DUF141: domain 1 of 1, from 17 to 135: score 184.6, E = 1.6e-51
*->aagftCipggpitinkpvnisnpgfyPagwnessskippqfpanqnC
aag++C ++g inkpv++++p+++Pa+w+e+++ +pq+ ++q+C
F55G11.2 17 AAGNVC-KTG-KAINKPVIDGTPVYWPASWTETQP--APQLEKGQSC 59
swtinvPkGyyAkltlsakttisagddkddsitvtdsngnlekvtsntgs
sw++++P GyyAkl++s+ktt dkd++++++d +gnl ++t+ +
F55G11.2 60 SWIVTIPHGYYAKLIISGKTT-----DKDSRFQTVDAAGNLIQTTQ---E 101
dlespyyFvspkftinlstgnSVsndgnvtFgFsvqwsplp<-*
++e pyyF++ kfti++ +n g++tF+F+v+w+plp
F55G11.2 102 NME-PYYFPASKFTIAV------TNEGSATFAFKVVWWPLP 135