hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F54D8.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  F54D8.3  CE29809   Aldehyde dehydrogenase 2 status:Confirmed TR:Q20780 protein_id:AAA20615.3

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
aldedh        Aldehyde dehydrogenase family             853.4   7.6e-253   1
TPP_enzymes_N Thiamine pyrophosphate enzyme, N-termin     6.6          1   1
TAF           TATA box binding protein associated fac     6.1       0.33   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
TAF             1/1     442   451 ..    58    68 .]     6.1     0.33
TPP_enzymes_N   1/1     446   477 ..   150   182 .]     6.6        1
aldedh          1/1      37   505 ..     1   492 []   853.4 7.6e-253

Alignments of top-scoring domains:
TAF: domain 1 of 1, from 442 to 451: score 6.1, E = 0.33
                   *->TvsDidsAqLk<-*
                      ++ Did+A L+
     F54D8.3   442    MTKDIDKA-LH    451

TPP_enzymes_N: domain 1 of 1, from 446 to 477: score 6.6, E = 1
                   *->ideAfrtAtsgRpGPVyvdiPkDvagaeapaes<-*
                      id+A+++A + R+G V+v   +Dv++a+ap+ +
     F54D8.3   446    IDKALHIANATRAGSVWVN-CYDVFDAAAPFGG    477

aldedh: domain 1 of 1, from 37 to 505: score 853.4, E = 7.6e-253
                   *->ewvdsasgktfevvNPankgevigrvpeataeDvdaAVkAAkeAfks
                      e+v+++sgktfe++NPan g+v+++v+e+++ Dv  AVkAA+ Af+
     F54D8.3    37    EFVPAKSGKTFETINPAN-GKVLAQVAEGDKTDVNIAVKAAQNAFRI 82

                   GpwWakvpaseRariLrkladlieeredeLaaletlDlGKplaeAkgDte
                   G++W++++as+R+ +L++ladl+e++   La+le+lD+GKp+a A+  ++
     F54D8.3    83 GSEWRRMDASQRGVLLNRLADLMERDRVILASLESLDNGKPYAVAYN-AD 131

                   vgraideiryyagwarklmgerrvipslatdgdeelnytrrePlGVvgvI
                   ++  i+ +ryyagwa+k +g    ++++ +d    ++ytr+eP+GV+g+I
     F54D8.3   132 LPLSIKTLRYYAGWADKNHG---KTIPIEGD---YFTYTRHEPVGVCGQI 175

                   sPWNFPlllalwklapALAaGNTVVlKPSEqTPltalllaelieeaGann
                   +PWNFPll+ +wkl+pALA GNTVV+K +EqTPl+al +a l +eaG
     F54D8.3   176 IPWNFPLLMQAWKLGPALAMGNTVVMKVAEQTPLSALHVAALTKEAG--- 222

                   lPkGVvnvvpGfGaevGqaLlshpdidkisFTGSteVGklimeaAAaknl
                   +P+GVvn++pG+G+++Gqa++sh+d+dk++FTGSteVG+l+m+aAA +n+
     F54D8.3   223 FPDGVVNIIPGYGHTAGQAISSHMDVDKVAFTGSTEVGRLVMKAAAESNV 272

                   kkVtLELGGKsPvIVfdDADLdkAverivfgaFgnaGQvCiApsRllVhe
                   kkVtLELGGKsP+I+f+DADL++ v+++  g F+n+GQ+C+A+sR +V+
     F54D8.3   273 KKVTLELGGKSPNIIFADADLNDSVHQANHGLFFNQGQCCCAGSRTFVEG 322

                   siydeFveklkervkklkliGdpldsdtniyGPlIseqqfdrvlsyIedg
                   +iyd Fv++ ke ++k + iGdp+d  t++ GP+++ +q++ +l+yI+ g
     F54D8.3   323 KIYDDFVARSKELAEKAV-IGDPFDLKTTQ-GPQVDGKQVETILKYIAAG 370

                   keeGAkvlcGGerdeskeylggGyyvqPTiftdVtpdMkImkEEIFGPVl
                   k+ GA++++GG +++++     G++v+PTif++V+++M+I++EEIFGPV+
     F54D8.3   371 KKDGAQLVTGGAKHGDQ-----GHFVKPTIFANVKDQMTIAQEEIFGPVM 415

                   piikfkdldEAIelaNdteYGLAayvFTkdilarafrvakaleaGiVwvN
                   +ii+f++ +E +e aN+t YGLAa+v Tkd +++a ++a+a+ aG VwvN
     F54D8.3   416 TIIRFDTMEELVEKANNTIYGLAAGVMTKD-IDKALHIANATRAGSVWVN 464

                   DvcvhaaepqlPFGGvKqSSGiGrehgGkygleeYteiKtVtirl<-*
                     c+ + ++ +PFGG+Kq SGiGre+ G+ygle Yte+KtVti+
     F54D8.3   465 --CYDVFDAAAPFGGFKQ-SGIGREL-GEYGLEAYTEVKTVTIKV    505

[DB home][top]