hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F54D5.11
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Query:  F54D5.11  CE26813   transcription intiation factor TFIIE-BETA status:Partially_confirmed TR:Q20776 protein_id:CAA91336.2

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
TFIIE_beta TFIIE beta subunit core domain               159.8    7.1e-45   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
TFIIE_beta   1/1      74   146 ..     1    76 []   159.8  7.1e-45

Alignments of top-scoring domains:
TFIIE_beta: domain 1 of 1, from 74 to 146: score 159.8, E = 7.1e-45
                   *->shkfSvLakiVeYmkkRhqngdqhPlTldEILDeLsildlgkkvlnl
                      +++fS++akiV+YmkkRh+n++q+PlTl+EILDeL+i+dl+k++l++
    F54D5.11    74    ATNFSTMAKIVDYMKKRHLNNQQWPLTLQEILDELQIFDLSKRSLAF 120

                   LksEALkNNpiledekcgekFaFkPlYni<-*
                   L+ EAL+NNp+l++e+  ekFaF+P+Y+i
    F54D5.11   121 LQ-EALPNNPRLIMES--EKFAFRPPYKI    146

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