Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F54C9.9
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Query: F54C9.9 CE20865 status:Partially_confirmed TR:Q20760 protein_id:CAA90257.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Krr1 Krr1 family 422.5 3.8e-123 2
L51_S25_CI-B8 Mitochondrial ribosomal protein L51 / S 4.7 6.5 1
Orbi_VP6 Orbivirus helicase VP6 3.7 4.4 1
DUF354 Protein of unknown function (DUF354) 3.6 4.8 1
NAD_kinase ATP-NAD kinase 1.8 9.2 1
DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A 1.5 6.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DNA_topoisoIV 1/1 41 51 .. 482 492 .] 1.5 6.5
Orbi_VP6 1/1 202 220 .. 1 19 [. 3.7 4.4
Krr1 1/2 318 346 .. 228 256 .] -10.9 4.1e+04
L51_S25_CI-B8 1/1 339 359 .. 72 92 .] 4.7 6.5
NAD_kinase 1/1 371 391 .. 93 113 .. 1.8 9.2
Krr1 2/2 364 598 .. 1 256 [] 432.7 3.3e-126
DUF354 1/1 640 668 .. 332 363 .] 3.6 4.8
Alignments of top-scoring domains:
DNA_topoisoIV: domain 1 of 1, from 41 to 51: score 1.5, E = 6.5
*->eELeeikkkfg<-*
eE+++ik+k+g
F54C9.9 41 EEMQKIKDKYG 51
Orbi_VP6: domain 1 of 1, from 202 to 220: score 3.7, E = 4.4
*->lvDWaEsEsgKedKaEpKE<-*
+ W+ sE gK dK KE
F54C9.9 202 FYQWMKSEDGKADKKKAKE 220
Krr1: domain 1 of 2, from 318 to 346: score -10.9, E = 4.1e+04
*->RskdeearDkrkyekKrrlrelkkqvfks<-*
R + ee + + k ekK++l elkk + ++
F54C9.9 318 RHEREERKKREKAEKKKELAELKKMKRSE 346
L51_S25_CI-B8: domain 1 of 1, from 339 to 359: score 4.7, E = 6.5
*->lenmsaeeIekklekLldskG<-*
l++m+++eIe+kl kL + G
F54C9.9 339 LKKMKRSEIEQKLGKLQKAAG 359
NAD_kinase: domain 1 of 1, from 371 to 391: score 1.8, E = 9.2
*->Tefdpeelkkvleavlegeyk<-*
++fdp+e++k+ + ++++ey+
F54C9.9 371 ADFDPKEFDKKMQSIFNDEYY 391
Krr1: domain 2 of 2, from 364 to 598: score 432.7, E = 3.3e-126
*->lsdkdLddDFDPeefDkkMqelFddeYYgeeesd...Edekpefddd
l+ ++L++DFDP+efDkkMq++F+deYYg+ee+++++Edekp+f+ d
F54C9.9 364 LTLDELNADFDPKEFDKKMQSIFNDEYYGVEENIqenEDEKPIFS-D 409
idkedyedwDnldgvirSGeaPeqfAatdgeevekhcededlnedenkkk
++++dyed+Dnld++++ +++eq+A++d+ee+e++++ded++e++++kk
F54C9.9 410 MEDSDYEDYDNLDVDEL--KREEQEADDDDEEDEESVDDEDEQEVPKSKK 457
SdeeefkdnfgeksekeaedakydegkkekreeleaalqreKplfnpede
S+++++k++++++++k+++++k+d+++k+kr++l++al+r+Kplfnp++
F54C9.9 458 SAMKNGKFDMVAAAQKAMSKDKNDSRRKSKRNALKDALARKKPLFNPKE- 506
KTETDAELmERLQASfeeyvEEYYrldyediigdlpGAGAGVStrFkYre
KT feey++EYY+ldyediigd+p trFkYr+
F54C9.9 507 KT-------------FEEYFNEYYALDYEDIIGDTP-------TRFKYRD 536
VePedFGLsteEILaADDreLNqwasLKKmapYRskdeearDkrkyekKr
Ve++dFGLst+EIL+AD+r+LN+wasLKK+++YR+++ee++D+++y++K+
F54C9.9 537 VESNDFGLSTDEILEADERQLNAWASLKKVTAYRTSQEEFFDRKAYQRKA 586
rlrelkkqvfks<-*
+++++kk+++++
F54C9.9 587 EDVNKKKRILSI 598
DUF354: domain 1 of 1, from 640 to 668: score 3.6, E = 4.8
*->sNlkkRkkvrtlegsmedpvelIielVenlie<-*
++++k+k v+ e e+p e + e +en +e
F54C9.9 640 KKRGKKK-VKLTET--ENPEENMTEAIENEVE 668