Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F54B11.6
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F54B11.6 CE05930 status:Partially_confirmed TR:Q20741 protein_id:CAA94138.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-MYND MYND finger 51.3 1.2e-15 1
zf-HIT HIT zinc finger 9.1 1.2 1
RTP Replication terminator protein 6.0 1.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RTP 1/1 81 101 .. 102 122 .] 6.0 1.2
zf-HIT 1/1 139 149 .. 23 33 .] 9.1 1.2
zf-MYND 1/1 125 159 .. 1 43 [] 51.3 1.2e-15
Alignments of top-scoring domains:
RTP: domain 1 of 1, from 81 to 101: score 6.0, E = 1.2
*->qLKvELDRCKkLiEKALsDnF<-*
q K+ELD K+ +EK ++n
F54B11.6 81 QFKIELDQTKEELEKKHAENL 101
zf-HIT: domain 1 of 1, from 139 to 149: score 9.1, E = 1.2
*->gvpYCSLrCyk<-*
++ YCS++C++
F54B11.6 139 NTAYCSVECQQ 149
zf-MYND: domain 1 of 1, from 125 to 159: score 51.3, E = 1.2e-15
*->CanCgkeatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
C++C+ ea + +C C+n++YCS eCQ+ +W+ H+++C
F54B11.6 125 CWQCNSEAIY-----HC--CWNTAYCSVECQQGHWQ-IHRKFC 159