Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F53A2.6
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Query: F53A2.6 CE31809 EUKARYOTIC TRANSLATION INITIATION FACTOR 4E (EIF-4E) (EIF4E) (MRNA CAP-BINDING PROTEIN) (EIF-4F 25 KD SUBUNIT) status
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IF4E Eukaryotic initiation factor 4E 436.4 2.6e-127 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IF4E 1/1 1 199 [. 36 248 .] 436.4 2.6e-127
Alignments of top-scoring domains:
IF4E: domain 1 of 1, from 1 to 199: score 436.4, E = 2.6e-127
*->pteaesvsaevsaPeehllkHPLqrnWTlWYlkpdrgkrfksesWed
+te+e +++aP +PL+rnWT+WYl+++r+k sWed
F53A2.6 1 MTETE----QTTAP-----IYPLKRNWTWWYLNDERNK-----SWED 33
nlkpvttFdTVEeFWaLYnhIkrPSeLplgsDyhlFKdGIrPmWEDpaNk
+lk+v+tF+TV eFWaLY+ I++PS+L+ +Dy++F+d+I+PmWE+p+N
F53A2.6 34 RLKKVYTFNTVSEFWALYDAIRPPSGLNALCDYNVFRDDIQPMWEVPENS 83
nGGKWlitlsKgrspedLDriWLetLLAlIGEQFDedgdeICGAVvnVRg
nGG+Wli+++Kg++pe++D iWLe+L+Al+GEQF +d+++ICG V+nVRg
F53A2.6 84 NGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNVRG 133
kgdkISiWTknAsdeeaqlrIGkklKevLnlPSkiH.lPdndvleYkvHd
kg+kIS+WTk+++d+e+++rIG +lKe+L+++Sk+H++P++dv++Y++H+
F53A2.6 134 KGSKISVWTKDCNDDETNMRIGVVLKEKLMAASKDHsKPLFDVIRYEDHE 183
DskkktRSstrktrytl<-*
+++kkt Ss +k++++l
F53A2.6 184 SCQKKT-SSVVKAKLSL 199